PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g01610
Common NameGSCOC_T00023388001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 297aa    MW: 33229.6 Da    PI: 6.4288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g01610genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.2e-092469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a +++ ++   +W  +a +++ g+t  +++  ++ 
      Cc06_g01610 24 KWTPEENKRFENALALFDKDtpdRWFNVATMIP-GKTVSDVIKQYRE 69
                     7********************************.*******999986 PP
2Myb_DNA-binding46.21.1e-14131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
      Cc06_g01610 131 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 175
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-41972IPR009057Homeodomain-like
PROSITE profilePS512937.7332075IPR017884SANT domain
SMARTSM007175.7E-102173IPR001005SANT/Myb domain
CDDcd001674.57E-82471No hitNo description
SuperFamilySSF466897.18E-122476IPR009057Homeodomain-like
PfamPF002492.0E-72470IPR001005SANT/Myb domain
PROSITE profilePS5129421.106124180IPR017930Myb domain
SuperFamilySSF466892.37E-17126179IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-18127179IPR006447Myb domain, plants
SMARTSM007173.5E-13128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12128175IPR009057Homeodomain-like
CDDcd001671.90E-11131176No hitNo description
PfamPF002493.9E-12131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEILSPSPYL GNSSWLFEES KGAKWTPEEN KRFENALALF DKDTPDRWFN VATMIPGKTV  60
SDVIKQYREL VDDVGDIEAG LIPIPGYTGD SFTLEWVNDH DYDGLKQFYG PGGKRNSSNR  120
SSDHERKKGV PWTEEEHRQF LLGLKKYGKG DWRNISRNFV TTRTPTQVAS HAQKYFIRQL  180
SGGKDKRRSS IHDITTVNLA EKKSPSPDDD GPPSTDESSP VLQPSANSDM NGISKAFYDY  240
NPPNQGATMA FHLSNSSTTS TPHQIISYGQ RPSDRNTHGI ALHGFQFGDD NSFFQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-172287873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066324.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A068UD680.0A0A068UD68_COFCA; Uncharacterized protein
STRINGSolyc09g014250.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-110MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]