PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g00990

Common Name

GSCOC_T00023305001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 341aa MW: 38080.5 Da PI: 7.9571

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g00990	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	6e-32	58	111	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL ++hvkSHLQ+YR+ Cc06_g00990 58 PRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLNIAHVKSHLQMYRS 111 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-30	54	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.41	54	114	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-14	56	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-22	58	113	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	59	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEGSEDTECS KACPSSGKDE VDENDGDKQK DGGSSSNSTV EENENKPSVR PYVRSKMPRL 60 RWTPDLHLRF VHAVERLGGQ ERATPKLVLQ LMNIKGLNIA HVKSHLQMYR SKKIDDPSQG 120 VTDHSHLWEG VDRNIFNLGQ IPMLPGLHQN QKSTFRYGDA SWNGLENSMQ MSAMRQSTNK 180 KRPGFYDTWP GRIVGSRNND VYSGFRNSNQ LWSWQTHELE SKMQSLPQQE YWQDQLKSSI 240 QVQLKVQDFS SCRSNIPGVG RSMIQKKRAG VKRKATDCNI HLNLSLGLGP IGDGHQDSLE 300 DDDGHLSLSL CSPSSSKITR LIDDASKENA SGASTLDLTL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-18	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	59	113	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027066215.1	0.0	uncharacterized protein LOC113692072
TrEMBL	A0A068UFP0	0.0	A0A068UFP0_COFCA; Uncharacterized protein
STRING	EOY07117	1e-100	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-56	G2-like family protein