PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g16290
Common NameGSCOC_T00038580001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 332aa    MW: 37254.3 Da    PI: 4.943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g16290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-131663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed +l+  +++ G  +W++ ++  g+ R++k+c++rw +yl
      Cc05_g16290 16 KGPWSPAEDYRLISFIQKQGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                     79******************************99************97 PP
2Myb_DNA-binding55.81e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
      Cc05_g16290  69 RGNFTPEEEQTIINLHNALGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3731163IPR017930Myb domain
SuperFamilySSF466891.98E-2914110IPR009057Homeodomain-like
SMARTSM007176.2E-101565IPR001005SANT/Myb domain
PfamPF002491.9E-121663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-221770IPR009057Homeodomain-like
CDDcd001671.91E-71863No hitNo description
PROSITE profilePS5129425.59764118IPR017930Myb domain
SMARTSM007179.2E-1668116IPR001005SANT/Myb domain
PfamPF002491.9E-1669114IPR001005SANT/Myb domain
CDDcd001671.78E-1171114No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2871118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRGRAPCCD KSKVKKGPWS PAEDYRLISF IQKQGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEEQTI INLHNALGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLVI  120
GNDDANCHQK IETSNSFTSY SASPSPSSID EQQEPCISPT HPNAPNLENF GQPAEETCSL  180
DSCINSKASP EVRKTTTEEP KEMAQDGNTM EIPLEPDADF WNFLDGLDPM DKPTECQPQQ  240
EHGVSQSSNF GENQQEDVHE YKRWLRYLEN ELGLVGGNDG ECPQKGAGAE QQQQQLVTDT  300
SDDEMMSRPE FDPAAMAYFS MWPSSPQNFG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-26161184105C-Myb DNA-Binding Domain
1msf_C6e-26161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061061.10.0transcription factor MYB10-like
SwissprotQ6R0A66e-76MYB63_ARATH; Transcription factor MYB63
TrEMBLA0A068UZ540.0A0A068UZ54_COFCA; Uncharacterized protein
STRINGVIT_19s0085g00050.t015e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-76myb domain protein 63
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]