PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g16210 | ||||||||
Common Name | GSCOC_T00038591001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 117aa MW: 12878 Da PI: 5.7372 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 24.3 | 8.4e-08 | 1 | 32 | 69 | 100 |
DUF260 69 ardPvyGavgvilklqqqleqlkaelallkee 100 +rdPvyG+v+ i++lq+q++ l+++lal++++ Cc05_g16210 1 MRDPVYGCVSAISSLQNQVDLLQSQLALAQAQ 32 69**************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.7E-5 | 2 | 30 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MRDPVYGCVS AISSLQNQVD LLQSQLALAQ AQVLQMRISS TQSSSSLISM SQDQYYNSTT 60 VPTDHNSAPP DHHHQNHSPT ASRDHRHLEP TSSHFNTDTP PMMLDEGNIG DSLWSY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062426.1 | 4e-80 | LOB domain-containing protein 4-like | ||||
TrEMBL | A0A068UYH6 | 1e-78 | A0A068UYH6_COFCA; Uncharacterized protein |