PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g15850 | ||||||||
Common Name | GSCOC_T00038638001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 441aa MW: 50555.4 Da PI: 7.055 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 392 | 6.6e-120 | 44 | 440 | 1 | 374 |
GRAS 1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal............... 81 +++lL++cAe +ss +d + a++l++ l +++p+gd+++Rl++ ft+AL+ rl+r +++l ++lp ++++ + +++++l Cc05_g15850 44 MRQLLISCAELMSSsSDSSSAHRLITILMANSNPYGDSTERLIHQFTRALSLRLNRyATTTLLNTLPNTQQHLGHPLNNTFFLthpasinhmpqvves 141 589*******998847888*************************************778888889988888866633333333578888899999999 PP GRAS 82 ..........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168 +++v+P+++fs+ltaNqaIl+a+++ e++Hi+Df+i++GlQWp+++qa+ +R + pslRiTg g+ + e+l++tg+rLakf Cc05_g15850 142 deqallqtayLSLNQVTPFIRFSQLTANQAILDAIDQGqEAIHILDFNIMHGLQWPPFMQAIVER-YPRPSLRITGTGN----DLETLRRTGDRLAKF 234 999888665333***********************876599***********************9.899**********....*************** PP GRAS 169 AeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 A++lg++f+f++l+ + ed + L + pgE+laVn+v+ lhrll+++ l+ +L+ +k ++P+vv+++e+ea+hn++ Fl+rf+eal+ Cc05_g15850 235 AHSLGLRFQFHPLHLH-NEDDPIAVLssavVLLPGESLAVNCVHYLHRLLKDRDGLRL----FLHRIKVMNPRVVTMAEREANHNHPLFLQRFVEALD 327 ************8444.33333444411115666****************77777776....************************************ PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359 +y+a+fdslea+lp++s+er +vE++++greiv++va+ g++rrerhe++++W+ +++++GF++vpls +a +qaklllr ++ s+gy+++ ++s++ Cc05_g15850 328 HYAAVFDSLEATLPPNSRERLNVEQVWFGREIVDIVAADGDHRRERHERFRSWELMFRSCGFNNVPLSPFALSQAKLLLRLHYpSEGYQLHILNDSFF 425 ************************************************************************************************** PP GRAS 360 lgWkdrpLvsvSaWr 374 lgW+++ L+svS+Wr Cc05_g15850 426 LGWQNQLLYSVSSWR 440 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.581 | 18 | 419 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-117 | 44 | 440 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MLGSFGSSSR EVEEDEPSPP EHHHVHYHQI QQYRSFTSPT LAHMRQLLIS CAELMSSSSD 60 SSSAHRLITI LMANSNPYGD STERLIHQFT RALSLRLNRY ATTTLLNTLP NTQQHLGHPL 120 NNTFFLTHPA SINHMPQVVE SDEQALLQTA YLSLNQVTPF IRFSQLTANQ AILDAIDQGQ 180 EAIHILDFNI MHGLQWPPFM QAIVERYPRP SLRITGTGND LETLRRTGDR LAKFAHSLGL 240 RFQFHPLHLH NEDDPIAVLS SAVVLLPGES LAVNCVHYLH RLLKDRDGLR LFLHRIKVMN 300 PRVVTMAERE ANHNHPLFLQ RFVEALDHYA AVFDSLEATL PPNSRERLNV EQVWFGREIV 360 DIVAADGDHR RERHERFRSW ELMFRSCGFN NVPLSPFALS QAKLLLRLHY PSEGYQLHIL 420 NDSFFLGWQN QLLYSVSSWR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-56 | 51 | 439 | 26 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061607.1 | 0.0 | scarecrow-like protein 18 | ||||
Refseq | XP_027170112.1 | 0.0 | scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-130 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A068UYY7 | 0.0 | A0A068UYY7_COFCA; Uncharacterized protein | ||||
STRING | XP_009618056.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11298 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-129 | GRAS family protein |
Publications ? help Back to Top | |||
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