PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g14220 | ||||||||
Common Name | GSCOC_T00038848001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26222 Da PI: 8.2468 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.9e-20 | 33 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g Cc05_g14220 33 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 81 8*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-37 | 32 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 32 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.62E-18 | 32 | 89 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 32 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 33 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-22 | 33 | 90 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-10 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MPRGRAAAVA KQAAAAAAAG ETNGSGGSKE IRFRGVRKRP WGRFAAEIRD PWKKTRVWLG 60 TFDSAEDAAR AYDAAARTLR GPKAKTNFPL PSTSSYHHPH QFSNYQNPNN PNFNNNDPAM 120 FIDHPQNRLY HQEPHQILHP QRPTSSSLSS TVESFSGPRP QTTAAAATSM IPSSSRRHPR 180 SPPVVPDDCH SDCDSSSSVI DDGDCDIASS SFRKPPLPFD LNLPAPVDVD ADDLHCTALC 240 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 33 | 95 | 6 | 69 | ATERF1 |
3gcc_A | 2e-20 | 33 | 95 | 6 | 69 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF278734 | 0.0 | KF278734.1 Coffea arabica ethylene response factor 9 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027064307.1 | 1e-178 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 5e-65 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A068UZX4 | 1e-177 | A0A068UZX4_COFCA; Uncharacterized protein | ||||
STRING | XP_009770784.1 | 1e-83 | (Nicotiana sylvestris) | ||||
STRING | PGSC0003DMT400057443 | 3e-83 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 5e-32 | ethylene responsive element binding factor 3 |