PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g13920
Common NameGSCOC_T00020999001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 810aa    MW: 88410.3 Da    PI: 6.4691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g13920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-183481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+++v+++G g+W tI ++ g+gRt k+c++rw ++l
      Cc05_g13920 34 KGPWSAEEDERLKKCVEEHGIGNWITIEKYSGLGRTSKSCRLRWTNHL 81
                     79*******************************************996 PP
2Myb_DNA-binding24.75.4e-0887117132
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                      +g++T++E+ l v+++k++G++ W+ I+++++
      Cc05_g13920  87 KGSFTKQEERLVVKLHKKYGNK-WSYISSKVP 117
                      799*******************.******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.2022985IPR017930Myb domain
SuperFamilySSF466891.46E-2432117IPR009057Homeodomain-like
SMARTSM007173.9E-153383IPR001005SANT/Myb domain
PfamPF002497.3E-153481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-233588IPR009057Homeodomain-like
CDDcd001673.56E-123681No hitNo description
PROSITE profilePS512948.48386167IPR017930Myb domain
SMARTSM007173.4E-686165IPR001005SANT/Myb domain
PfamPF002491.2E-587117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1889114IPR009057Homeodomain-like
CDDcd001675.66E-589160No hitNo description
Gene3DG3DSA:1.10.10.604.9E-18146162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MLEDGDDLDI QGPLENKGGR AAAGEEGDVM VVKKGPWSAE EDERLKKCVE EHGIGNWITI  60
EKYSGLGRTS KSCRLRWTNH LRPNLKKGSF TKQEERLVVK LHKKYGNKWS YISSKVPPIV  120
VLFWCILCCN LWYLIRCISG FRPKINLPGR TDNEIKNFWH GRSSPTAVTQ SSAPAQGSSI  180
SAKGSSAPSP KIDVSSSVTS SQFSSTATGS LINSPKLHLS VQLPTASSVP LQTSSLPSAL  240
SSSNLNSPKI HDPMIASPHS PLRLNLTSSI PLDSHLQHNR CASPFLLSSQ SWNASKAEPP  300
SVQTPTSALR PTPEMKDSER SVAVLDAPLQ EAQAKADTLH KNSPEELSVD GYLINNDLQG  360
KILVTESIRD NVFYQSSSER DFSCEKPRTI NLLGQSLKQE NTTRETPKTE DLINKRSCKK  420
VSHDKCLKPG ILMGKISRRQ GLLSEISKTG VLLVESEKKQ ILLQELMNNN LTQDVLARRS  480
SKTVDLQLGG LTKTTKLFGE RLSIEDPLSQ ISARKSSVVQ KSEEGVSIFE NLTSLRNQNL  540
VEDILDISPT RSASNPDTFG FSYSPKDTTT QFISDDLQWN LSSAQVVAGE VCNEILRGGA  600
PLASQLQEHQ IETLGPVFSH RPELVLSNFG YDGGGKSTCG EFYEGDHLDK SSREKCPDSP  660
KGEFIEDQSQ GGQVVSGGFM TEGMLVSQNW HEILRGSISD LDQYITANLL RSPTPDGKLN  720
TPQECGGGIM EEALSIEGLS SRSLKNGVSL DQSSRDIFVG ESSSANVIGL HEVALSEFVS  780
PPRQTTVAHL LTSRDQFSEA GSSQCYEGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-2234160498C-Myb DNA-Binding Domain
1msf_C4e-2234160498C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064243.10.0uncharacterized protein LOC113690514
TrEMBLA0A068UBW20.0A0A068UBW2_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.18e-37myb domain protein 97