PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g13430
Common NameGSCOC_T00021065001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 239aa    MW: 26993.7 Da    PI: 8.306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g13430genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.5e-1474121253
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                  ++ GVr++k  g+++AeIrdp     + kr++lg+f taeeA +a+ a  +++
  Cc05_g13430  74 RFVGVRRRK-FGKYAAEIRDPI----KkKRIWLGTFKTAEEASEAYLAKQREF 121
                  789***999.9*********72....35******************9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-1973114No hitNo description
PfamPF008473.2E-774120IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1474121IPR016177DNA-binding domain
SMARTSM003803.8E-1574134IPR001471AP2/ERF domain
PROSITE profilePS5103216.42374135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1874121IPR001471AP2/ERF domain
PRINTSPR003671.3E-67586IPR001471AP2/ERF domain
PRINTSPR003671.3E-697113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTPQSDNLAK KNMTIRKIRV LYSDPAATDS SSDEEQSSHE KKPKRIIHEI LIDQKKMAPS  60
QPKFKWDKKN KEKRFVGVRR RKFGKYAAEI RDPIKKKRIW LGTFKTAEEA SEAYLAKQRE  120
FKALEGFQWE PVDCKQSYLS GSSDEDQLQS SMPTPEALGS PMHTRSESSH DSSSSMSKEN  180
LKVQCLEFDG GCVMGMFVPV PKGPEDYPGS EFFLPILDNQ GFLLGEFSKL DDLSICLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17997RRKFGKYAAEIRDPIKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063672.11e-177ethylene-responsive transcription factor CRF3-like
TrEMBLA0A068UBE11e-176A0A068UBE1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50751534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-20ERF family protein