PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g13080
Common NameGSCOC_T00021107001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 587aa    MW: 65291.7 Da    PI: 6.3123
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g13080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4256e-1302165851373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ecA+a+ +++le+ ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y++l+++e +    ++ l+++++++e++P+lkf++++a
  Cc05_g13080 216 LKQLLMECARAFYENELENFEKLVETARGAVSITGEPIQRLGAYMLEGLIARKEASGTNIYRTLRCKEPE---GKDLLSYMHILYEICPYLKFGYMAA 310
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+Hi+Df+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + e l ++g+rLa + e++++p+ef++ v     +++ ++L
  Cc05_g13080 311 NGAIAEACRNEDRIHIVDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSQyaRGEGLAAVGKRLAAISEKFNIPVEFHA-VPVFAPEVTRDML 407
                  ****************************************************999999**************************.6888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++pgEalaVn+ lqlh+++desv+++++rd +L++vk l+Pkvv++veqe+++n+++Fl rf e+leyysa+f+s+++++pr+ +eri+vE+++l+r
  Cc05_g13080 408 CIRPGEALAVNFPLQLHHTPDESVDVTNPRDGLLRMVKALNPKVVTLVEQESKTNTAPFLPRFWETLEYYSAIFESIDVTMPRDRKERINVEQHCLAR 505
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivn++aceg+er+erhe ++kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e +g+++lgWkdr+L+s+SaW
  Cc05_g13080 506 DIVNIIACEGKERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLVEADGAMLLGWKDRNLISASAW 585
                  *************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.222190567IPR005202Transcription factor GRAS
PfamPF035142.1E-127216585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDSHQFFGYS VAGADISSYP SYSTAPSVPN RLYGSLKFEL RNSPNSPFLS HFDSETLTTL  60
SDGQEQHSST ENLSEASPSC NSSLNYTSSC YQQLSSSPDS SQEKPQISSG GTTLFQNPNN  120
GHNIKYTLQQ LETALMGPDE EATTSAPSVG ENKGPQASGQ KSRALSQENQ PLGSQIIHSQ  180
PSYALHLRKS GNELPMEKRL RAIEELSLKG IPPTNLKQLL MECARAFYEN ELENFEKLVE  240
TARGAVSITG EPIQRLGAYM LEGLIARKEA SGTNIYRTLR CKEPEGKDLL SYMHILYEIC  300
PYLKFGYMAA NGAIAEACRN EDRIHIVDFQ IAQGTQWMTL LQALAARPSG APHVRITGID  360
DPVSQYARGE GLAAVGKRLA AISEKFNIPV EFHAVPVFAP EVTRDMLCIR PGEALAVNFP  420
LQLHHTPDES VDVTNPRDGL LRMVKALNPK VVTLVEQESK TNTAPFLPRF WETLEYYSAI  480
FESIDVTMPR DRKERINVEQ HCLARDIVNI IACEGKERVE RHELFGKWKS RFTMAGFRQY  540
PLSSYVNSVI RGLLRCYSEH YTLVEADGAM LLGWKDRNLI SASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-622185866375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064982.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A068UBH10.0A0A068UBH1_COFCA; Uncharacterized protein
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]