PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g12920 | ||||||||
Common Name | GSCOC_T00021126001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 477aa MW: 52053.6 Da PI: 6.9686 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 6.9e-06 | 367 | 405 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Cc05_g12920 367 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 405 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.468 | 356 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-12 | 366 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-6 | 366 | 409 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-9 | 366 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0064 | 367 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MADEFQVGSG SWWDSSTSSR TRFDRGSTAA ASTSVNSSIN MGSFGWPTEI VAARSSMDSS 60 VSMSGGSMLF PPAVDHSSQK LQAHESSSAG GSGEGSMLPD PNLQIMGLAL SSQTMDWNQA 120 ALFRGEKAQS SFRSMLQEDA STNFQQESGV TSSQDHQWRH KLYAGSPDDS SVITEFKPMN 180 QRGLSLDQPQ FSSNMSSSNS TITCQGLSPN FQVESASYAA SPNSILQGLL VPDHHHQQQQ 240 QSMNYSYPTS YGMESTSNQL MPSNSWSKFP QFLRNSPPKQ QPPHGQLHFS NNTPFWNASS 300 TGMSDVRSSL FPPLQTQLPM PNFEEKSKNA SEVRDLPVAK KSSSSSSAPS NKRPRNETPA 360 PMPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHDQVN VLSTPYMKSG 420 APMQHQQNPD KSKDPEGPKQ DLRSRGLCLV PVSSTFPVTH ETAVDYWTPT FGGTFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027127437.1 | 0.0 | transcription factor bHLH123-like | ||||
TrEMBL | A0A068UC31 | 0.0 | A0A068UC31_COFCA; Uncharacterized protein | ||||
STRING | XP_008226756.1 | 1e-179 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-73 | bHLH family protein |