PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g12500 | ||||||||
Common Name | GSCOC_T00021185001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 39614.3 Da PI: 8.7301 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.5e-53 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeel+v+yL++kv+g++++l ++i e+d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g+ Cc05_g12500 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFNL-QIIGEIDLYKFDPWDLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-EGR 109 79****************************.89***************7777799*************************************99.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+apkg+kt+W+mheyrl Cc05_g12500 110 KVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-67 | 9 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.097 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGVRETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FNLQIIGEID LYKFDPWDLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLS EPQRKNGSAR LDDWVLCRIY KKNSSAGAKP VSGLQSREHS 180 HGSSTSSSSQ FDDVLESLPE ISDRFFALPR MNSLKNLHQE DQKINIQNLG SGSFDWATLA 240 GLNSLPELGP GSQAQAIPAA AAHGHVNSNV ASCNNNDRNN NVNAQNDMYV PSFPQAGHVD 300 EEVQSGLRSH RVENPSFFQH NASPLVPHTH SFHNSVDPFG IRYPPTQTGI MGFRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-110 | 1 | 166 | 7 | 172 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063418.1 | 0.0 | NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-161 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A068UCE6 | 0.0 | A0A068UCE6_COFCA; Uncharacterized protein | ||||
STRING | Migut.M00863.1.p | 1e-172 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-128 | NAC family protein |
Publications ? help Back to Top | |||
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