PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g11560
Common NameGSCOC_T00021301001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 599aa    MW: 62836.2 Da    PI: 6.2396
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g11560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.73e-061475755
                 --HHHHHHHHHHHH...HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  7 ftkeqleeLeelFe...knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 f++ ++ e+e+  +   ++  ps+e    LA+k            ++ +qV +WFqNrR+  
  Cc05_g11560 14 FNPAEVAEMEAILQahnNTAVPSREILLALAEKFsnspersgkvVVQMKQVWNWFQNRRYAL 75
                 6777777777766643357789999999999999999999999999*************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-10476IPR009057Homeodomain-like
SMARTSM003890.0011782IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-81379IPR009057Homeodomain-like
CDDcd000862.38E-51376No hitNo description
PROSITE profilePS500718.9731378IPR001356Homeobox domain
PfamPF167191.7E-41143270IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNPAEVA EMEAILQAHN NTAVPSREIL LALAEKFSNS PERSGKVVVQ  60
MKQVWNWFQN RRYALRAKAT KVPAKVGPSP VPRDDLAAAR NVPQAPQHIS VPPAIVRNVP  120
QVSQPISAPS VQSAGKNGSD NSQMEFEAKS ARDGAWYDVA TFISHRSVET SDPEVLVRFA  180
GFGPEEDEWV NVRKHVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR  240
RHDVRGCRCR FLVRYDHDQT EEIVPLRKVC RRPETDYRLQ QLHAESANWN QNKAGSEPHT  300
GNTLKVSLPA EATQKQHKAE APAEVKEQQH NTEGRANTGP AATPISVDNL STITAAVSRA  360
HANITSAAVF APVVTTTAPI AQSNVPGATM PVANNTSPVS HSSVSKATVS TDNATAPVTY  420
SNVSGASVST TTPVANSSVS GSSSSGMSTT VPVDNSDDSR ATISTAAPVA TSHVSGATSS  480
VVTTTTLGDN SNVFGANTMD SATNSNDTVD ANPVTSATSP IADSNFSGAP GVAPIGHSGV  540
LPDTEPKGLP ENVSGAGASN SVENKSTPQA TIAVTSSTTD TATTGAVEGS SDENTLQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A6e-481412741134SHH1 SAWADEE
4iur_B6e-481412741134SHH1 SAWADEE
4iut_A6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B6e-481412741134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062529.10.0mucin-17-like isoform X2
TrEMBLA0A068UEA60.0A0A068UEA6_COFCA; Uncharacterized protein
STRINGSolyc10g007130.2.11e-173(Solanum lycopersicum)
STRINGXP_009758415.11e-169(Nicotiana sylvestris)
STRINGXP_009628382.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-131sequence-specific DNA binding transcription factors;sequence-specific DNA binding