PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g10900
Common NameGSCOC_T00021384001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family BES1
Protein Properties Length: 328aa    MW: 35124.2 Da    PI: 9.1068
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g10900genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822208.61.7e-6421441149
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqssl 98 
                  ++++r ptwkErEnnkrRERrRRaiaa i+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg++p ++++++g s+sasp+ss++   
  Cc05_g10900   2 TSGTRLPTWKERENNKRRERRRRAIAANIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCRPVDRMDIMGGSTSASPCSSYH--- 96 
                  5899*******************************************************************************************... PP

       DUF822  99 kssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149
                       +sp +sy++sp+sssfpsp+s+  + + +   +sl+p+l++ls++sss
  Cc05_g10900  97 -----PSPGTSYNPSPASSSFPSPASSPYAANINGdgNSLIPWLKNLSSSSSS 144
                  .....*******************9987665544456**********997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.6E-643139IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAANI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WTVEPDGTTY RKGCRPVDRM DIMGGSTSAS PCSSYHPSPG TSYNPSPASS SFPSPASSPY  120
AANINGDGNS LIPWLKNLSS SSSSTSSTKF QLLCHGGSIS APVTPPLSSP TARTPRLKTD  180
WDDSSARASW GSHSSFLPLS TPPSPGRQAP PDSEWFAGMQ IPQGGPTSPT FSLVSANPFA  240
FKFESLRHTG SHMCTPGQSG TCSPAIPAGS DVPMAEVISD EFAFRSIKGG LVKPWEGERI  300
HEDCGSDDLE LTLGSSKTRR ANKRAVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-22677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062465.10.0BES1/BZR1 homolog protein 4-like isoform X1
SwissprotQ9ZV881e-128BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A068UCW30.0A0A068UCW3_COFCA; Uncharacterized protein
STRINGXP_009352718.11e-148(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19842464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-109BES1/BZR1 homolog 4