PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g10550 | ||||||||
Common Name | GSCOC_T00021428001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | STAT | ||||||||
Protein Properties | Length: 722aa MW: 80897.1 Da PI: 5.9715 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 185.3 | 7.7e-58 | 232 | 351 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 ldv+ll+a+ qp++k++evvasLlyad+ ++v +++d eapLL+sydG+e++s+drp+kl+ Grasfklk+sqLsskcdnrLfri+feipk+ +ypfl Cc05_g10550 232 LDVTLLDAFDQPLNKEMEVVASLLYADNNEPVPETNDGEAPLLTSYDGIEYASSDRPSKLISGRASFKLKMSQLSSKCDNRLFRIRFEIPKI-RYPFL 328 89*****************************************************************************************9.6**** PP STAT 99 eavskpirCisrsrntrsssltk 121 ea+s pirCisrsrn+r+ss t Cc05_g10550 329 EAFSPPIRCISRSRNARASSITL 351 *****************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.505.10 | 9.3E-7 | 618 | 686 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 3.23E-8 | 621 | 703 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.197 | 625 | 705 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MVKILDGANV LEEMNYGLLK DLRVELKDSD TEENGAFCFS FWLYLANYGS PLPCGILHQE 60 HIDINSSVPF LLLNEKKKMM LLPVIFLHKE ASMLVGLNPL TEVPSIVTQF DIPLKKWVHV 120 GCEASQNSLR LRVNGEIVGE KHLTPVLNDE LHADGMKRRA LPCIIGEYQG FQGYVHFAKL 180 SPSGLPLKTH CIEDPPLQLS IDSSSASDIE EDGDGVWSIV GGKASCRRNF SLDVTLLDAF 240 DQPLNKEMEV VASLLYADNN EPVPETNDGE APLLTSYDGI EYASSDRPSK LISGRASFKL 300 KMSQLSSKCD NRLFRIRFEI PKIRYPFLEA FSPPIRCISR SRNARASSIT LKKLPSGVHL 360 LNGSQSPGLD DRSSELLNSV VREAKPSPSS KRVKLGQEKP FEIFADSFTS KRADKECKSY 420 AFTTTEGNHT YGSNLVRKPE NHDGSDNFSS DSETSETTKS DLMSIPSSTN QLSDMVVFKY 480 CLGGLSERAV LLKEIALSAR EEELVKFADQ VSLFSGCSHH RHQIMIAKRL IEEGIEAWNL 540 ISQKNDHVLW ENLLSGVKEH FVKIVPCGTR SLTHQDVELL RGISGCQELV SQDHFEKMWF 600 WLYPVALSLS QVWINALWSS VSPKWIEGFI TKEEAESSLQ GPGGFQEPGT FVLRFPTSRS 660 WPHPDAGNLV ITYIGSDYAI HHRLLSLDLM YSSRDRTVRP LQDMLLEEPE LSRLGRHDIF 720 Y* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062585.1 | 0.0 | SH2 domain-containing protein A-like | ||||
TrEMBL | A0A068UD02 | 0.0 | A0A068UD02_COFCA; Uncharacterized protein | ||||
STRING | Solyc07g062050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9394 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |