PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g09630
Common NameGSCOC_T00021559001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 338aa    MW: 37498 Da    PI: 7.0827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g09630genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33197254259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers +d ++v++tYeg+Hnh+
  Cc05_g09630 197 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCIVKKRVERSFQDSSIVITTYEGQHNHH 254
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-34181256IPR003657WRKY domain
SuperFamilySSF1182907.59E-29189256IPR003657WRKY domain
PROSITE profilePS5081131.8191256IPR003657WRKY domain
SMARTSM007743.7E-38196255IPR003657WRKY domain
PfamPF031061.0E-25197254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDHHRNDGY HYGTNSFYHD YMGTGGSTST FPFFGGGNSL MYNQPSTSQN LAGSSSAYDP  60
TSYMSFTDCL QGTAADYNNL SGAFDMSCNS LPDQSVCPVD NSSSDKNTTS LGEAAAGAAT  120
TSAENPRTPV SSLSCSSNET GVEEESSKSN TTDLQTKGSE DRDDKSKKLN KPKKKGEKKP  180
REPRFAFLTK SDIDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTSQKCIVK KRVERSFQDS  240
SIVITTYEGQ HNHHCPATLR GNAAAMLSPS FLSSNSASLP TFPPEFITHM LPSTSRNYQN  300
PPYYQNFNPQ DQQFQLPHDY TNFFQDMNPS FMHKPEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-261892571078Probable WRKY transcription factor 4
2lex_A6e-261892571078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063441.10.0WRKY transcription factor 71-like
SwissprotQ8VWJ23e-54WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A068UCE80.0A0A068UCE8_COFCA; Uncharacterized protein
STRINGVIT_12s0028g00270.t011e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-50WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]