PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g09250 | ||||||||
Common Name | GSCOC_T00002655001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28184.8 Da PI: 9.474 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 29 | 78 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Cc05_g09250 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 78 79***********************************************8 PP | |||||||
2 | K-box | 105.1 | 8.6e-35 | 98 | 193 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s++ea+a+ +qqe++kL+k i+++q+++Rh+lG++++ L++keL++Le ++ek++ +iR++Knell+++ie + k+e elq++n++Lr+k++e Cc05_g09250 98 NPGSVSEANAQFYQQEASKLRKHIREIQNSNRHILGDGVDGLNFKELKNLEGKVEKAIGRIRTRKNELLFAEIELMHKREIELQNANTYLRAKIAE 193 334499***************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.375 | 21 | 81 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-41 | 21 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-45 | 22 | 98 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-33 | 22 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 23 | 43 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 23 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-27 | 30 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 58 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-25 | 105 | 191 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.663 | 107 | 197 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDCPSQDHQF DQSSSSQLRK TGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD 60 AEVALIVFSS RGRLYEYANN SVRGTIERYK KACADSSNPG SVSEANAQFY QQEASKLRKH 120 IREIQNSNRH ILGDGVDGLN FKELKNLEGK VEKAIGRIRT RKNELLFAEI ELMHKREIEL 180 QNANTYLRAK IAENERAQQH MNLMPGSEYQ PLASQPYDVR NFLPVNLLEP DQHYSRQDQT 240 ALQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 3e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 3e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 3e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 3e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ483246 | 0.0 | KJ483246.1 Coffea arabica PLE (PLE) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063684.1 | 0.0 | floral homeotic protein AGAMOUS | ||||
Refseq | XP_027063685.1 | 0.0 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q93XH4 | 1e-136 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A068VDX1 | 0.0 | A0A068VDX1_COFCA; Uncharacterized protein | ||||
STRING | VIT_12s0142g00360.t01 | 1e-133 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-115 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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