PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g09000
Common NameGSCOC_T00002683001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 405aa    MW: 45709.7 Da    PI: 5.783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g09000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind963.8e-301849101
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   ++ed+ +++++sws++g sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ ++         weF ++ F +g+++ll++i r+k
   Cc05_g09000   1 MVEDPMTNSIVSWSRSGLSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKSDPDQ---------WEFLNEDFIRGQRHLLRNIYRRK 84 
                   89******************************************************99988.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-48183IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-29183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-32183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVEDPMTNSI VSWSRSGLSF IVWNPPEFAR DLLPKYFKHN NFSSFIRQLN TYGFRKSDPD  60
QWEFLNEDFI RGQRHLLRNI YRRKPIHSHS VQGNSAVPLG NAERQSFQEE IERLKGEKNL  120
LQSELERHKQ ESREFETEVN SLAERLRNID NRQRQLMACL AQLLQKPGFA SGLMQQSENH  180
NKRRRLLISN YLYDEANIVL NAELIEKLDA SVNFWETFLY GMCSSSAEEM YGFACLPHPP  240
PLTITGPLAS SGDSDVNVQP CSSNSLRSSP SGEFHSSPEL VVSSNHVDSP ATSSPCLDMD  300
SRSKSSGIDV NTSPATIMEI ETSKDRVGSV SASAPAGAND VFWQQFLTET PGSSDTQEVQ  360
SERREIAARS SDSRLADHHR TWWNKNNVEN LTEQMGHLTP AEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2218336129Heat shock factor protein 1
5d5v_B7e-2218336129Heat shock factor protein 1
5d5v_D7e-2218336129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062444.10.0heat stress transcription factor A-4b-like
TrEMBLA0A068VDZ20.0A0A068VDZ2_COFCA; Uncharacterized protein
STRINGVIT_12s0028g01410.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.19e-86HSF family protein