PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g08580

Common Name

GSCOC_T00016884001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 276aa MW: 29161.1 Da PI: 4.7967

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g08580	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91	9.6e-29	73	130	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers dp+ + +tY+ eHnh+ Cc05_g08580 73 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSCLDPTKLLVTYSCEHNHP 130 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.7E-30	64	132	IPR003657	WRKY domain
PROSITE profile	PS50811	31.364	66	132	IPR003657	WRKY domain
SuperFamily	SSF118290	6.28E-25	67	132	IPR003657	WRKY domain
SMART	SM00774	2.8E-32	71	131	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	73	130	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MVQKNPLDHD QQEDSTSTPE NVADDSAFSG DEAYEVTAPS PKKRKGAQKK VITVPIGEGD 60 GSRSKGEVYP PPDSWSWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSCLDPTKLL 120 VTYSCEHNHP IPTTTTKHHP TTTSAAAAAA TPSATTTSTS TSTSSAATDS APVKSAAEDE 180 YGVFANRPGL ESDDNSGSSF NELAGELGWF SNVGSTMMDS PSLVGPAWVD ADVALMLPIG 240 EEDQLLFGDL GELPECSVVF RRRGLEGTTC CAGSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-20	49	133	6	80	Disease resistance protein RRS1
5w3x_D	5e-20	49	133	6	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065103.1	1e-172	probable WRKY transcription factor 69
TrEMBL	A0A068V5W4	0.0	A0A068V5W4_COFCA; Uncharacterized protein
STRING	XP_009593761.1	1e-103	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	1e-59	WRKY DNA-binding protein 69