PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g08380 | ||||||||
Common Name | GSCOC_T00016856001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 331aa MW: 36300.9 Da PI: 9.5155 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.4 | 6.6e-17 | 62 | 152 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Liea + +l+rg+l++++W+ev++++ + ++++r+ +qCk++++ l+k+yk +k+ + + +++st+p+f +l+ Cc05_g08380 62 CWSEDATHTLIEAWGSHYLDLNRGNLRQKHWQEVADAVnadhaHTKKLHRTDIQCKNRIDTLKKKYKLEKAKFLQSNGRVVSTWPFFASLD 152 7****************************************99999*************************99998999*********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.8E-26 | 60 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-4 | 61 | 126 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSDEDDAGLP PTSTNTKPTT PTSPSPSPPP PPSSSADIFP PHPPPRPSTT TKATSFPIRE 60 DCWSEDATHT LIEAWGSHYL DLNRGNLRQK HWQEVADAVN ADHAHTKKLH RTDIQCKNRI 120 DTLKKKYKLE KAKFLQSNGR VVSTWPFFAS LDSLIGDSFI KANAPPSGTP PFPVLPPLPS 180 AVPVGPRSKR PAPAQAMGEE AVFRRNFSAM AAAAAAVAED DEDEEESDTS SAAAVGLGSG 240 GMRRKKRRGA AGKVAAEGYR KLAEAIRGFA DIYERVEEAK QRQMVELEKQ RMQFAKDLEI 300 QRMKLFMESQ VQLEKLKRSK RNSQSGDGYL * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063311.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A068V5U4 | 0.0 | A0A068V5U4_COFCA; Uncharacterized protein | ||||
STRING | XP_009760894.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 2e-35 | sequence-specific DNA binding transcription factors |