PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g08220
Common NameGSCOC_T00016839001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 256aa    MW: 28480.1 Da    PI: 7.5578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g08220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-1361107354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+e+ErrRR+riN  +  Lr+l+P        K++Ka+ L ++++++k+L
  Cc05_g08220  61 RNHSEAERRRRERINGHLTSLRSLIPGT-----SKMDKAALLAEVINHVKEL 107
                  58*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.21558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1061107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.48E-461110No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1461110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1462113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-1364113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEFFNSFNGF PENYGYQGTV KNGSGSSSSL ILDNEKGELV RALVRPGQKG VNAEKALVAL  60
RNHSEAERRR RERINGHLTS LRSLIPGTSK MDKAALLAEV INHVKELRKK ATEATKGMLV  120
PTDTDEVRVE EHQADAAGEA SYTIRAFLCC DYKHELFSDL RQALETLPVK TVSAEIATLG  180
SRMVNVFEMT GCDQQNLENS EGRELLVNSV RQALRSVLDK FYASEEFLSR NALSNKRRRV  240
SLFDASSSSS LENFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERRRRE
2235239KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062648.10.0transcription factor bHLH30-like isoform X1
TrEMBLA0A068V5H90.0A0A068V5H9_COFCA; Uncharacterized protein
STRINGXP_009786357.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-36bHLH family protein