PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g07750

Common Name

GSCOC_T00016774001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 1785aa MW: 199874 Da PI: 5.4407

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g07750	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2.1e-19	44	99	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+++ + yps+++r+eLA+klgLt+rq ++WF+ rR k++k Cc05_g07750 44 VKRKMKTPSQLEVLEKAYSVDTYPSEAMRAELAMKLGLTDRQLQMWFCHRRLKDRK 99 58999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-18	33	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.04E-17	35	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	40	100	IPR001356	Homeobox domain
SMART	SM00389	2.0E-18	42	104	IPR001356	Homeobox domain
CDD	cd00086	8.48E-15	43	100	No hit	No description
Pfam	PF00046	4.4E-17	44	99	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.346	577	636	IPR018501	DDT domain
SMART	SM00571	1.5E-20	577	636	IPR018501	DDT domain
Pfam	PF02791	3.5E-16	578	633	IPR018501	DDT domain
Pfam	PF05066	1.1E-13	765	832	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.8E-9	984	1026	IPR028942	WHIM1 domain
Pfam	PF15613	6.2E-12	1165	1237	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1785 aa Download sequence Send to blast
MEKVEVDGGG SGGSAAAAAA DAGAEGGGYD VVKKNSTPEG EPRVKRKMKT PSQLEVLEKA 60 YSVDTYPSEA MRAELAMKLG LTDRQLQMWF CHRRLKDRKP PGEKRVKKEA SPGMVGALSN 120 GVGKELVGGY GGGMKNDQSL GLVRTALGPT EILQQHRVVH RSGTALARIG TEMPAVKRYY 180 EPPQALSELR AIAFVEAQLG ERLREDGPVL GMEFDPLPPG AFGSPIGLQK PGVGLYEAQV 240 YETPDAKVIQ GAKRTIHEYQ FLPEQPSIRD DIRERALPFQ YYGSSTDAQS SRTTLSAGRS 300 FMHGTEQLTP GYSFQGKLSG GPCLSLLPQL GNQGHHLSPP SGEVDIFPQR NSVLNIDIDR 360 PGAHLTRGLE TPLIPTEKRV IHDEERLERK RKSEEARIAR EVEAHEKRIR KELEKQDLLR 420 RKRDEQLRKE MERQDKERRK EEERLLREKQ REEERYQREQ RREMERREKF LQKESIRAEK 480 MRLKLEMRRE KEAARLKAAT ERATARRIAK ESVELIDDER LELLELAASS QGLPSTLALD 540 NEALQNLESH RDSLTEFPPK TVCLKRPFGM QPWVESEESV GSILMIWRFL ITFADVLGLW 600 PFTLDEIVQA FHDYDSRLLG EIHIALLRII IRDIEDIART PATAVGANQN AAILGGGHPQ 660 IVEGAYSWGF DILSWHQHLN PLTWPEILRQ FALAAGFGPK LKRRNVEQSH PHDENEARFI 720 FLLKNDISYI IAGLRNGAAA ENAVAKMRQR GISNLGRSRH RLTPGTVKYA AFHVLSLEGS 780 KGLTILEAVD KIQNSGLRDL TTSKTPEASV AAALSRDTKL FERTAPSTYC VRAPYRKDPA 840 DADAILATAR ERIFAYKNEF LDAEEPDEAE KEDAERDEDS ESDMADDPDI NDLDTERNLN 900 KESLHSFEPS TSGVKHHSGN IKEKSHVQFT ESSGSSIANT NGSFDIVQPE GMEGASGSQS 960 AATVGIHIEA ANKEDNVIDE SSTVELWVQG LTEGDYSDLS VEERLDALVA LIGVANEGNS 1020 IRVVLEERLE AANALKKQMW AEAQLDKRRV KEEYALKVQS SSFAGSRSEQ NSSITSSDGR 1080 QSTFLNIDGR NESLSTNPKN HQMDLGDSSR IPNSSASTTA ERNMMLQEFS GPDVLLQQSA 1140 YAAEKSRLEM KAYIGQKAEE IYVYKSVPLG QDRRRNRYWQ FIASPSQNDP GSGRIFVELH 1200 DGRWRLIDSA EGFDGLLASL DVRGTRESHL HSMLQRIEVS FKETAKKNLC SRSTSQDADD 1260 VKEEVYEESP NSMVPDMMEP LASIRIKCES YGLDKNVTLE RYRDFEKWMW DECFSIMKLR 1320 ALKYGKTLRT RLLSICSHCH DLYFFENQHC PFCHKNCSIL VGTFNFGEHV SYCKEKQEEV 1380 QNRTLVKLEP SSPLRIRLLK AQLASLEASL LPEAVKAFWS EDYRRSWGMK LEIASSAEDL 1440 LQILSLLENA VKRDFLGADY ETANELLGFE NLKGGMVDNT PTLEMTAVPP WIPQTTSAVA 1500 LRLMDLDTSI CYTLQQKDDS EKVKGARHII RIPTRNTGAT NAAENVRTER PQEAGTVPED 1560 TWDGPGAKLN SSRRAHRQVA RPQRRVSESR NGSRQGTSAA KRDKFGPLLG WKGRPNGRGG 1620 RKRGRRTVRS RQNPTKKRTD IASKRASAGA DIYDKTPSSH QHEWDEEGTT QIQAEVAGNE 1680 SSSERSGFDD DNDLMVEDYS GCFDTKSENL AKGIDYGMGV ENGNDELDDD EEDDEEEADE 1740 RPGEQVVEEY FDSDSEEDAN VSVSGEKMGN LNKGSEFSSS DYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1785 aa Download sequence Send to blast

MEKVEVDGGG SGGSAAAAAA DAGAEGGGYD VVKKNSTPEG EPRVKRKMKT PSQLEVLEKA  60
YSVDTYPSEA MRAELAMKLG LTDRQLQMWF CHRRLKDRKP PGEKRVKKEA SPGMVGALSN  120
GVGKELVGGY GGGMKNDQSL GLVRTALGPT EILQQHRVVH RSGTALARIG TEMPAVKRYY  180
EPPQALSELR AIAFVEAQLG ERLREDGPVL GMEFDPLPPG AFGSPIGLQK PGVGLYEAQV  240
YETPDAKVIQ GAKRTIHEYQ FLPEQPSIRD DIRERALPFQ YYGSSTDAQS SRTTLSAGRS  300
FMHGTEQLTP GYSFQGKLSG GPCLSLLPQL GNQGHHLSPP SGEVDIFPQR NSVLNIDIDR  360
PGAHLTRGLE TPLIPTEKRV IHDEERLERK RKSEEARIAR EVEAHEKRIR KELEKQDLLR  420
RKRDEQLRKE MERQDKERRK EEERLLREKQ REEERYQREQ RREMERREKF LQKESIRAEK  480
MRLKLEMRRE KEAARLKAAT ERATARRIAK ESVELIDDER LELLELAASS QGLPSTLALD  540
NEALQNLESH RDSLTEFPPK TVCLKRPFGM QPWVESEESV GSILMIWRFL ITFADVLGLW  600
PFTLDEIVQA FHDYDSRLLG EIHIALLRII IRDIEDIART PATAVGANQN AAILGGGHPQ  660
IVEGAYSWGF DILSWHQHLN PLTWPEILRQ FALAAGFGPK LKRRNVEQSH PHDENEARFI  720
FLLKNDISYI IAGLRNGAAA ENAVAKMRQR GISNLGRSRH RLTPGTVKYA AFHVLSLEGS  780
KGLTILEAVD KIQNSGLRDL TTSKTPEASV AAALSRDTKL FERTAPSTYC VRAPYRKDPA  840
DADAILATAR ERIFAYKNEF LDAEEPDEAE KEDAERDEDS ESDMADDPDI NDLDTERNLN  900
KESLHSFEPS TSGVKHHSGN IKEKSHVQFT ESSGSSIANT NGSFDIVQPE GMEGASGSQS  960
AATVGIHIEA ANKEDNVIDE SSTVELWVQG LTEGDYSDLS VEERLDALVA LIGVANEGNS  1020
IRVVLEERLE AANALKKQMW AEAQLDKRRV KEEYALKVQS SSFAGSRSEQ NSSITSSDGR  1080
QSTFLNIDGR NESLSTNPKN HQMDLGDSSR IPNSSASTTA ERNMMLQEFS GPDVLLQQSA  1140
YAAEKSRLEM KAYIGQKAEE IYVYKSVPLG QDRRRNRYWQ FIASPSQNDP GSGRIFVELH  1200
DGRWRLIDSA EGFDGLLASL DVRGTRESHL HSMLQRIEVS FKETAKKNLC SRSTSQDADD  1260
VKEEVYEESP NSMVPDMMEP LASIRIKCES YGLDKNVTLE RYRDFEKWMW DECFSIMKLR  1320
ALKYGKTLRT RLLSICSHCH DLYFFENQHC PFCHKNCSIL VGTFNFGEHV SYCKEKQEEV  1380
QNRTLVKLEP SSPLRIRLLK AQLASLEASL LPEAVKAFWS EDYRRSWGMK LEIASSAEDL  1440
LQILSLLENA VKRDFLGADY ETANELLGFE NLKGGMVDNT PTLEMTAVPP WIPQTTSAVA  1500
LRLMDLDTSI CYTLQQKDDS EKVKGARHII RIPTRNTGAT NAAENVRTER PQEAGTVPED  1560
TWDGPGAKLN SSRRAHRQVA RPQRRVSESR NGSRQGTSAA KRDKFGPLLG WKGRPNGRGG  1620
RKRGRRTVRS RQNPTKKRTD IASKRASAGA DIYDKTPSSH QHEWDEEGTT QIQAEVAGNE  1680
SSSERSGFDD DNDLMVEDYS GCFDTKSENL AKGIDYGMGV ENGNDELDDD EEDDEEEADE  1740
RPGEQVVEEY FDSDSEEDAN VSVSGEKMGN LNKGSEFSSS DYSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063959.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A068V5S3	0.0	A0A068V5S3_COFCA; Uncharacterized protein
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator