PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g07590 | ||||||||
Common Name | GSCOC_T00016753001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 23493.2 Da PI: 8.836 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 5e-21 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdps+ + r++lg+f+taeeAa+a++aa+++++g Cc05_g07590 24 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDAAAREFRG 73 69*******.**********965...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.2E-40 | 24 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 24 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 24 | 81 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.49E-19 | 24 | 81 | No hit | No description |
PROSITE profile | PS51032 | 24.065 | 24 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 24 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAMKEKSKDV KPSTGKANAV KEVHFRGVRK RPWGRYAAEI RDPSKKSRVW LGTFDTAEEA 60 ARAYDAAARE FRGPKAKTNF PSPSEIQSPS NSSTVESSSG DGSTHAPVEL DLTRRLGVAA 120 GGGGAGSEIP ILHHPQAMAV LPNGQPVVFF QPMALNRADY PYRFGPVAMD YANVVGRGRG 180 AVHSDSDSSS VVDDNISDGD NMKRGGGLDL DLNFPPPVEA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 24 | 81 | 5 | 63 | ATERF1 |
3gcc_A | 8e-21 | 24 | 81 | 5 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF743546 | 0.0 | KF743546.1 Coffea arabica ERF transcription factor 07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063385.1 | 1e-160 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 5e-70 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A068V7H9 | 1e-159 | A0A068V7H9_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068959 | 2e-70 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-22 | erf domain protein 9 |