PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g05910
Common NameGSCOC_T00035178001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 242aa    MW: 27652.2 Da    PI: 8.4516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g05910genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
      Cc05_g05910 14 KGAWSEDEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP

2Myb_DNA-binding53.26.7e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++++++qlG++ W++Ia +++ gR+++++k++w++
      Cc05_g05910  67 RGNYTVEEEDLIIKLHEQLGNR-WSAIAGKLP-GRSDNEVKNFWHT 110
                      899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.48961IPR017930Myb domain
SuperFamilySSF466892.98E-2911108IPR009057Homeodomain-like
SMARTSM007174.2E-111363IPR001005SANT/Myb domain
PfamPF002496.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-211568IPR009057Homeodomain-like
CDDcd001672.41E-81661No hitNo description
PROSITE profilePS5129423.7262116IPR017930Myb domain
SMARTSM007174.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.0E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2569116IPR009057Homeodomain-like
CDDcd001673.68E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRSPYIDKK GLKKGAWSED EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPGLKRGNY TVEEEDLIIK LHEQLGNRWS AIAGKLPGRS DNEVKNFWHT RLRKRINQDP  120
RSTKIIKQTS DQKTGHMHDA NQIKLSAGIS DSDSNEKREM EPNIAAAAPV ADTKMSSLIC  180
DSSLSDSNSS VEYSFAESFE SFWTQPFILD ASHNSNVLAL PPMEEEFTFL SPPMFIYDGM  240
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061148.11e-180transcription factor MYB4-like
TrEMBLA0A068UW920.0A0A068UW92_COFCA; Uncharacterized protein
STRINGcassava4.1_014242m1e-70(Manihot esculenta)
STRINGcassava4.1_032937m1e-70(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-56myb domain protein 15