PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g05910 | ||||||||
Common Name | GSCOC_T00035178001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27652.2 Da PI: 8.4516 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.7e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l +v ++G +W+ ++ g+ R++k+c++rw +yl Cc05_g05910 14 KGAWSEDEDNKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l++++++qlG++ W++Ia +++ gR+++++k++w++ Cc05_g05910 67 RGNYTVEEEDLIIKLHEQLGNR-WSAIAGKLP-GRSDNEVKNFWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.48 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.98E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.72 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.68E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVRSPYIDKK GLKKGAWSED EDNKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LRPGLKRGNY TVEEEDLIIK LHEQLGNRWS AIAGKLPGRS DNEVKNFWHT RLRKRINQDP 120 RSTKIIKQTS DQKTGHMHDA NQIKLSAGIS DSDSNEKREM EPNIAAAAPV ADTKMSSLIC 180 DSSLSDSNSS VEYSFAESFE SFWTQPFILD ASHNSNVLAL PPMEEEFTFL SPPMFIYDGM 240 D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061148.1 | 1e-180 | transcription factor MYB4-like | ||||
TrEMBL | A0A068UW92 | 0.0 | A0A068UW92_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_014242m | 1e-70 | (Manihot esculenta) | ||||
STRING | cassava4.1_032937m | 1e-70 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-56 | myb domain protein 15 |