PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g05890 | ||||||||
Common Name | GSCOC_T00035176001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 27674.3 Da PI: 8.5967 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.3e-11 | 76 | 110 | 9 | 45 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++l++++++q+G++ W++Ia +++ gRt++++k +w+ Cc05_g05890 76 QDLIIKLHEQFGNR-WSAIAWKLP-GRTDNEVKIYWH 110 5799**********.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-8 | 7 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.65E-14 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 11 | 13 | 63 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.208 | 60 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-5 | 65 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-8 | 76 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.99E-6 | 76 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-15 | 77 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVRSSRIDKN GLKEGAWNEE EDNKLRAYAL RYGHWNWRQL PKFAELKLTK KDLELQLVVR 60 RNLTKGDVYS ELGSQQDLII KLHEQFGNRW SAIAWKLPGR TDNEVKIYWH GRLSKRLNQA 120 RTLTEIIMEK TSEKSQHVVQ GNHQLKQSPA MSAYDSNQKR EMGPNIAAAA APLACSELCS 180 IRSSDSTLSD SNISVDYPFT EPFETFWTQP FDLDTSNKDN AYWLITATGG RICLLFLVFC 240 S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027172096.1 | 1e-106 | transcription factor MYB14-like | ||||
TrEMBL | A0A068UTX8 | 0.0 | A0A068UTX8_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 7e-29 | myb domain protein 63 |