PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g05740
Common NameGSCOC_T00035151001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 267aa    MW: 30150.4 Da    PI: 8.4616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g05740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
      Cc05_g05740 14 KGTWTPEEDRKLTAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP

2Myb_DNA-binding60.92.7e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eEdel++++++ lG++ W++Ia++++ gRt++++k++w++ 
      Cc05_g05740  67 RGNYTKEEDELIIKLHESLGNR-WSAIAAHLP-GRTDNEIKNHWHTT 111
                      899*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.753961IPR017930Myb domain
SuperFamilySSF466898.99E-3111108IPR009057Homeodomain-like
SMARTSM007171.6E-101363IPR001005SANT/Myb domain
PfamPF002492.9E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231568IPR009057Homeodomain-like
CDDcd001673.26E-81661No hitNo description
PROSITE profilePS5129427.82762116IPR017930Myb domain
SMARTSM007171.3E-1866114IPR001005SANT/Myb domain
PfamPF002492.1E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2769115IPR009057Homeodomain-like
CDDcd001675.84E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVRTPCCDKS GLRKGTWTPE EDRKLTAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPNLKRGNY TKEEDELIIK LHESLGNRWS AIAAHLPGRT DNEIKNHWHT TLNKSTKQES  120
RSGEPKRSSK SRSNREKNIR KRRKEEQENA PANPVTQEIL ESSQISSQPS PSPSSSLSSP  180
SSDHQLSSSN STTTTSDIHA PDSSNSLAGF SDIIAELAAE SGGTFWTEPF VTDYCNIAYY  240
PPSPFTSEAL LCSYDYYDDN VNTLLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063832.10.0transcription factor MYB4-like
TrEMBLA0A068UTW60.0A0A068UTW6_COFCA; Uncharacterized protein
STRINGcassava4.1_032937m7e-86(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-56myb domain protein 15