PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g05360
Common NameGSCOC_T00035104001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 449aa    MW: 50242.2 Da    PI: 4.7597
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g05360genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.61.7e-88454412373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkfshl 96 
                  ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r++r +++ ++   ++s+++     + +++++l  ++++ P+++f++ 
  Cc05_g05360  45 EKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLKALISRVSRVCPTPMNLNgNSSPQR-----RLMTVTELagYVDLIPWHRFGFC 137
                  689***************************************************8877776552333333.....22223333449************ PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......... 181
                  + N+aI +a++g ++vHi+D++i++++QWp+L+++La+Rpegpps+Ri + +   ++    + + ee+g+rL +fA+  +vpfefnv+          
  Cc05_g05360 138 ASNSAIFKAIQGYNKVHILDLSITHCMQWPTLIDTLAKRPEGPPSVRISVPSWRPPVpplLNVSSEEVGQRLGNFAKFKDVPFEFNVIgeqptvpssp 235
                  *************************************************988866668899999****************************999888 PP

         GRAS 182 ......vakrledl............eleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                                            ++++L+++ +Eal++n++  l +l+de+ + +s    +rd +L+ +k+l+P +++vv+++++++ +++  r+
  Cc05_g05360 236 cistleC------SslqydfllnqvlNPSTLKLEDDEALVINCQNWLRYLPDEQNNGASqeisCRDIFLNRIKDLNPCIITVVDEDSELDVSNLTSRI 327
                  5544430......2223334455555888889999****************9988766656779********************************** PP

         GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                  + +++y +  fd+le+ l++++++ri +E+  +g +i+n++a eg++r+er e+  k ++r+++ GF +vp+ e++ +++k ll +++  g+ +++e+
  Cc05_g05360 328 TTCFNYLWIPFDALETFLSKDNSQRIEYEAD-IGHKIENIIAFEGTQRIERLESGTKFSQRMRNNGFFSVPFCEETISEVKFLLDEHA-SGWGMKKED 423
                  *******************************.********************************************************.8999***** PP

         GRAS 356 gslvlgWkdrpLvsvSaW 373
                  + lvl+Wk+++ v ++aW
  Cc05_g05360 424 DMLVLTWKGHNSVYATAW 441
                  ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.40218423IPR005202Transcription factor GRAS
PfamPF035145.7E-8645441IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MKTELRGNNT PISLQNPNLF DSPQSSILSG ALKGCLGSLD GACIEKLLLH CASALESNDV  60
TLAQQVMWVL NNVASPVGDP NQRLTSWFLK ALISRVSRVC PTPMNLNGNS SPQRRLMTVT  120
ELAGYVDLIP WHRFGFCASN SAIFKAIQGY NKVHILDLSI THCMQWPTLI DTLAKRPEGP  180
PSVRISVPSW RPPVPPLLNV SSEEVGQRLG NFAKFKDVPF EFNVIGEQPT VPSSPCISTL  240
ECSSLQYDFL LNQVLNPSTL KLEDDEALVI NCQNWLRYLP DEQNNGASQE ISCRDIFLNR  300
IKDLNPCIIT VVDEDSELDV SNLTSRITTC FNYLWIPFDA LETFLSKDNS QRIEYEADIG  360
HKIENIIAFE GTQRIERLES GTKFSQRMRN NGFFSVPFCE ETISEVKFLL DEHASGWGMK  420
KEDDMLVLTW KGHNSVYATA WVPCGFDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-533844327420Protein SHORT-ROOT
5b3h_E1e-533844327420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063837.10.0scarecrow-like protein 32 isoform X1
RefseqXP_027172563.10.0scarecrow-like protein 32 isoform X1
TrEMBLA0A068UW460.0A0A068UW46_COFCA; Uncharacterized protein
STRINGEOX992080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-126GRAS family protein