PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g04370
Common NameGSCOC_T00031662001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 495aa    MW: 53738.5 Da    PI: 4.9763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g04370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-152976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll ++v++ G g+W+++ r  g+ R++k+c++rw ++l
      Cc05_g04370 29 KGPWTANEDALLMEYVRKNGEGNWNAVQRNSGLMRCGKSCRLRWSNHL 76
                     79*******************************************996 PP

2Myb_DNA-binding491.4e-1582125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E+ l+v++++++G++ W++ a+ ++ gRt++++k++w++
      Cc05_g04370  82 KGAFTQDEEALIVNLHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 125
                      799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6932476IPR017930Myb domain
SMARTSM007172.7E-112878IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-2828123IPR009057Homeodomain-like
PfamPF002491.5E-132976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-223083IPR009057Homeodomain-like
CDDcd001673.41E-93176No hitNo description
PROSITE profilePS5129425.06177131IPR017930Myb domain
SMARTSM007171.1E-1581129IPR001005SANT/Myb domain
PfamPF002493.3E-1482125IPR001005SANT/Myb domain
CDDcd001673.69E-1184127No hitNo description
Gene3DG3DSA:1.10.10.607.4E-2584130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAPDRSPSRK SSAASTSRSG GSLRHIMKKG PWTANEDALL MEYVRKNGEG NWNAVQRNSG  60
LMRCGKSCRL RWSNHLRPNL KKGAFTQDEE ALIVNLHAKF GNKWARMASQ LPGRTDNEIK  120
NYWNTRLKRR QRAGLPVYPV DIQPLNQYQP QNLQPSPSLV SFITAVDGKP KHSTPISIFD  180
MFNPTTPPAP TFQNQPMPSF LSDPSPNFKP AQNKNGIALS LSSVNSLLSL TSASLAFNNQ  240
GPSPLGASLP MPSLQFNCLN FGIANTVPVS HASFAQNDTG SGSSMGLPAI QSLVPETTSS  300
GSDYMIATSS DADDRDEGHD HQGLSHGNSG LLEDVIDESQ ALTRAEKPKE TCLDAEKSQG  360
EFLWDYKLME DVGGNVGEES GLNAILDEPF KDSTPTHSSI GVETTNASSL KSNPVEDDLF  420
NLLDDIPLPV TMPDWYDGNG NDIDGQCSNW TGGDAGKENH QPEPSYSPVA TTPEITDNNW  480
TDGASYWKNL PGIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-28261301104C-Myb DNA-Binding Domain
1msf_C8e-28261301104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062467.10.0transcription factor MYB101-like isoform X1
TrEMBLA0A068UQU40.0A0A068UQU4_COFCA; Uncharacterized protein
STRINGXP_009781770.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-67myb domain protein 101