PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g04370 | ||||||||
Common Name | GSCOC_T00031662001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 495aa MW: 53738.5 Da PI: 4.9763 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v++ G g+W+++ r g+ R++k+c++rw ++l Cc05_g04370 29 KGPWTANEDALLMEYVRKNGEGNWNAVQRNSGLMRCGKSCRLRWSNHL 76 79*******************************************996 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l+v++++++G++ W++ a+ ++ gRt++++k++w++ Cc05_g04370 82 KGAFTQDEEALIVNLHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 125 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.693 | 24 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-11 | 28 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.92E-28 | 28 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-13 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.41E-9 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 25.061 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 82 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.69E-11 | 84 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 84 | 130 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MAPDRSPSRK SSAASTSRSG GSLRHIMKKG PWTANEDALL MEYVRKNGEG NWNAVQRNSG 60 LMRCGKSCRL RWSNHLRPNL KKGAFTQDEE ALIVNLHAKF GNKWARMASQ LPGRTDNEIK 120 NYWNTRLKRR QRAGLPVYPV DIQPLNQYQP QNLQPSPSLV SFITAVDGKP KHSTPISIFD 180 MFNPTTPPAP TFQNQPMPSF LSDPSPNFKP AQNKNGIALS LSSVNSLLSL TSASLAFNNQ 240 GPSPLGASLP MPSLQFNCLN FGIANTVPVS HASFAQNDTG SGSSMGLPAI QSLVPETTSS 300 GSDYMIATSS DADDRDEGHD HQGLSHGNSG LLEDVIDESQ ALTRAEKPKE TCLDAEKSQG 360 EFLWDYKLME DVGGNVGEES GLNAILDEPF KDSTPTHSSI GVETTNASSL KSNPVEDDLF 420 NLLDDIPLPV TMPDWYDGNG NDIDGQCSNW TGGDAGKENH QPEPSYSPVA TTPEITDNNW 480 TDGASYWKNL PGIY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-28 | 26 | 130 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-28 | 26 | 130 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062467.1 | 0.0 | transcription factor MYB101-like isoform X1 | ||||
TrEMBL | A0A068UQU4 | 0.0 | A0A068UQU4_COFCA; Uncharacterized protein | ||||
STRING | XP_009781770.1 | 1e-112 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-67 | myb domain protein 101 |