PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g04000 | ||||||||
Common Name | GSCOC_T00031575001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WRKY | ||||||||
Protein Properties | Length: 623aa MW: 67651.9 Da PI: 7.1322 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 347 | 405 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Cc05_g04000 347 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 405 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 331 | 407 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-27 | 339 | 407 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 341 | 407 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 346 | 406 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 348 | 405 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MAKGSGLSFD PDRIGLFLHK PTVINSLLHH QEDKKGKHHN NYRHLLYYHH HHKSSPPTTI 60 QFPVNLNCST HDDDQDDGPL PHNNSDHHQE MDFFADKKLK TDESKAATIP HPDANTKDLS 120 GPTELGFNVN TGLHLLTANT SSDQSIVDDG ISPHSDDKRT KSELAVLQAE LERLNGENLR 180 LREVLTQVSN NYNNLQMHLM TVMQQQPQQK QDHIKADNIG EGQEGKLPLE DNNNKHQQNS 240 HGLMVPRQFM DLGLAAGATV ETDEASLSSS EGRSGRERSR SPTNNVEAST GGSDGRDDSP 300 EKGSQGWGPN KVPRLNNGSK NVDQATEATM RKARVSVRAR SEAPMITDGC QWRKYGQKMA 360 KGNPCPRAYY RCTMAAGCPV RKQVQRCAED RTILITTYEG NHNHPLPPAA MAMASTTSSA 420 ARMLLSGSMP SADGLMNSNF LARTLLPCSS SMATISASAP FPTVTLDLTQ NPNPLQFQRS 480 PNQFHLPFPN APQNFVGNPV ALLPQIFGQA LYNQSKFSGL QMSQDSDAAH LGHQVPQLPP 540 LHQGQQNPLA DTVTALTADP NFTAALAAAI TTIIGNPQST HAANNSSLNI TTNTSNNNGS 600 VTTSNNNSNG NNKVLNTSFP GN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 333 | 409 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062546.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-142 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A068UR90 | 0.0 | A0A068UR90_COFCA; Uncharacterized protein | ||||
STRING | XP_009804478.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-117 | WRKY family protein |