PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g02720
Common NameGSCOC_T00020893001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 428aa    MW: 46711.3 Da    PI: 7.0096
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g02720genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-125479126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C +++rtG C yG+rC+F+H+
  Cc05_g02720 54 PGEPDCIYYLRTGKCGYGSRCRFNHP 79
                 5789*********************8 PP
2zf-CCCH35.41.8e-1197122227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  + ++Cr++ rtG+CkyG+ C+++H++
  Cc05_g02720  97 GKPECRHYIRTGICKYGSACRYHHPQ 122
                  5799********************97 PP
3zf-CCCH33.38.4e-11142167227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C++++rt tCk+G  CkF H++
  Cc05_g02720 142 DEKPCPYYMRTSTCKFGVMCKFDHPQ 167
                  5789********************97 PP
4zf-CCCH29.51.3e-09274298226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C++f  tG CkyG+ Ck+ H+
  Cc05_g02720 274 DQPECHDFVNTGSCKYGADCKYYHP 298
                  689*********************8 PP
5zf-CCCH31.53e-10320344226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C+++a  G C+yG++Ck+ H+
  Cc05_g02720 320 GQAVCSYYAMHGLCRYGPTCKYDHP 344
                  7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8175381IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-95579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-55880IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-55978IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-595122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42295123IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-897122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4101122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624140168IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8142167IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4144166IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371272300IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7274298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4278297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371318346IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7318345IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7320344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MKNIEVQHNG GVSKSSNLFA GKERVDEAMG VLKIEDNGDD TGGAYGAVCF PDRPGEPDCI  60
YYLRTGKCGY GSRCRFNHPS YSSQGHQNSG VLPEREGKPE CRHYIRTGIC KYGSACRYHH  120
PQDRHNSDPL LLNIWGFPMR KDEKPCPYYM RTSTCKFGVM CKFDHPQPVS AANGLHVTGS  180
TAYGSTTLAF MTSSSIPYVG GVSDLSIPKT NSIINPSVQG SQSYMPLYLS PFQCWSTYMG  240
TMDGSSILDD LADQTFDGQT PLLSSSSHQP DRPDQPECHD FVNTGSCKYG ADCKYYHPGN  300
KVAPTTSNLL GPLGLPLRPG QAVCSYYAMH GLCRYGPTCK YDHPLAGYVG VPSLVFNTSV  360
LPYQWNSPTV PSTETSPSLS SKLPDLSRSS EVTMQKGQNS NTEKLLHIGA LPSTSQRPLE  420
VQQDESD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062401.10.0zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLA0A068UB710.0A0A068UB71_COFCA; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-79C3H family protein