PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g02250 | ||||||||
Common Name | GSCOC_T00018428001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 166aa MW: 17732.4 Da PI: 7.9417 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.5 | 1.5e-10 | 135 | 158 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +kt+ C +f + G C +GdrC+FaH Cc05_g02250 135 FKTKVCENFVK-GSCTFGDRCHFAH 158 69*********.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54791 | 3.65E-15 | 52 | 134 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 4.7E-16 | 57 | 129 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.4E-10 | 57 | 127 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.691 | 58 | 122 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.1E-10 | 60 | 123 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.01E-12 | 60 | 123 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-16 | 130 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-9 | 132 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.877 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 135 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MDHLLQLLKL VSATNKIQLK GVNLEINAIL LMVLGARPAP VHEDPHAKGP PPGRFGASAT 60 AKISMDASLA GAIIGKGGVN SKHICHTTGA KLAIRDHDSD PNSENIKLEG TFNQIKQATQ 120 MVCELIANVT PASNFKTKVC ENFVKGSCTF GDRCHFAHEE EELRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027089825.1 | 2e-65 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_027177869.1 | 2e-65 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q69XQ3 | 6e-52 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A068V7K9 | 1e-118 | A0A068V7K9_COFCA; Uncharacterized protein | ||||
STRING | VIT_08s0007g06400.t01 | 4e-54 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-45 | C3H family protein |