PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g00510
Common NameGSCOC_T00017088001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARF
Protein Properties Length: 895aa    MW: 98414.5 Da    PI: 6.4041
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g00510genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-24130231199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+        ++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  Cc05_g00510 130 FCKTLTASDTSTHGGFSVPRRAAEKVfptldyTLQPPA-QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVIFI--WNENNQL 224
                  99***********************9*****9666655.49************************************************..7888889 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Cc05_g00510 225 LLGIRRA 231
                  ****997 PP
2Auxin_resp120.51.3e-39256339183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t++ F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Cc05_g00510 256 AAHAAATNTRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-47116259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-42122245IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-22129230No hitNo description
SMARTSM010196.8E-25130232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183130232IPR003340B3 DNA binding domain
PfamPF023622.0E-22130231IPR003340B3 DNA binding domain
PfamPF065071.2E-34256339IPR010525Auxin response factor
PfamPF023099.0E-7749841IPR033389AUX/IAA domain
SuperFamilySSF542771.31E-7752833No hitNo description
PROSITE profilePS5174523.982759843IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MRLSTPGLST PPQPEEGEKK CLNSELWHAC AGPLVSLPAV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PGLPAQLICQ LHNLTMHADV ETDEVYAQMT LQPLSAQEQK DVCLLPAELG  120
TASKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPTLD YTLQPPAQEL IAKDLHGNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLIA GDSVIFIWNE NNQLLLGIRR ASRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAA ATNTRFTIFY NPRASPSEFV IPLAKYAKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFSLRLKRPW PSGLPSLPGL NSSDMNINAQ LSWLRGDIGG QGIQSLNFQG  420
FGATPWMQPR LDASVLGLQP DIYQAMTAAA LQETRNFDPS KVANQSLLPF SQNTSSGSAS  480
LVQSQMLQQS QSQQNFIQSF PEDQVIAQAQ LLQQQLQRHL SCDLQQQVQP SQQLHAQIQQ  540
QQQISKNVSN FSTIESVTQS QFSPLQALGS TCQQQTFSDI NHVTSTNSSS MQSLLNSFSS  600
DGASHLLNVH GVYSLASPSS SSKRIALDSQ LSSRATQSVA ARADNMSTPD SKVSDLSTLL  660
PPVSGREFAQ FKGMTDSQNN GLFGINSDSS LMLQNGISHL INGSGESESF SVPFATSTYT  720
SALGTDLPLS SDMTTSSCMD ESVFMQSAEN VDQANPPTKT FVKVHKSGSF GRSLDISKFS  780
SYHELRSELA RMFGLEGLLE DPQRSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS  840
PLEVQQMGKE GIDLPNSAPL HRLPSSGNSC DDYMSQKETR NSMNGIPTVG SLHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611836047388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065054.10.0auxin response factor 6-like
RefseqXP_027065055.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A068V5M40.0A0A068V5M4_COFCA; Auxin response factor
STRINGXP_009602213.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]