PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g00480

Common Name

GSCOC_T00017085001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 308aa MW: 34693.2 Da PI: 5.3596

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g00480	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	98.8	4.4e-31	192	267	5	80
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80 d ++Pi+n+ imk++lP nak+s++ k t+qec se+ f+t+ea+++c+ e+rkti+++dll+a a lGf +y Cc05_g00480 192 DYLVPITNILCIMKRILPPNAKVSEEVKTTIQECLSEYTHFITGEANERCHCEQRKTITAEDLLYAYARLGFRNYC 267 7789***********************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.85E-23	159	267	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.1E-28	192	267	IPR009072	Histone-fold
Pfam	PF00808	3.7E-18	195	257	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.1E-6	222	240	No hit	No description
PRINTS	PR00615	2.1E-6	241	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MFCAIYFRVA TTNQLQNEEK FTGSSTNLKL LSFVECGMVI FLCFQDAEWP SSYVIQVQAA 60 RAVDRSDSVD GGSHDVSETT CLVTELFSYN DGLEEFFILE LSLLEEKVNK TCSQSYYVLL 120 GIDFVDMNCL AGPSKGAVDG TYLKEIKWAA LVIREPGDAA SHVATNPSAS GSNVNNNNNS 180 GTPDPYPRHH PDYLVPITNI LCIMKRILPP NAKVSEEVKT TIQECLSEYT HFITGEANER 240 CHCEQRKTIT AEDLLYAYAR LGFRNYCWKN GYIHCRVNEK ICSHNGTLER IQDNYLSFIH 300 VYRIHVY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-28	192	266	10	84	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A068V678	0.0	A0A068V678_COFCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	4e-29	nuclear factor Y, subunit B6