PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g00060
Common NameGSCOC_T00017022001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 578aa    MW: 62704.5 Da    PI: 7.3323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g00060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.19.2e-1152155743374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ + l+ a++lL ++ el+sp g++ +R+aayf+ AL+ar+++s  ++y+ l+ ++ ++++ ++ ++al++++ +sP++kfsh+taNq
  Cc05_g00060 215 GLLLQCAECVAMDRLNDASNLLPEIAELSSPFGSSAERVAAYFADALSARIVSSYLGTYAPLTIKSLTKSHNQKLFNALQTYNSISPLVKFSHFTANQ 312
                  58************************************************************************************************ PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvk 197
                  aI +a++ge++vH+iD+di+qGlQWp L++ LasRp++  sl+iTg+gs    s e le+tg+rL++fA++lg+pfefn++ + ++ ++ +l +L v 
  Cc05_g00060 313 AIFQALHGEDHVHVIDLDIMQGLQWPGLFHILASRPRKIKSLKITGLGS----SMELLESTGRRLSEFASSLGLPFEFNPV-EGKIGNVkDLGQLGVM 405
                  *************************************************....***************************6.5555555489****** PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                   gE++++++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+++s er++vE++llg ei+
  Cc05_g00060 406 AGETIVIHWMH--HCLYDVTGSDFG----TLRLLTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGTDSVERHTVEQQLLGCEIR 496
                  **********9..888888888888....**********************.789******************************************* PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  n+va  g +r+ + + +e+W e l++ GF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Cc05_g00060 497 NIVAVGGPKRTGEVK-VERWGEELRRIGFRPVSLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 574
                  *********998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.759187554IPR005202Transcription factor GRAS
PfamPF035143.2E-112215574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSRENCLFKA YAPRHRLLVT KCAYTFCQFL LDKYPHKVLR LLILSSPFLP PHEPYNRYSP  60
QARSPPLPPP SFPVHTNQAI ISPLPAALSS SITASNSIYP SIMLHSLLHS NSTATSAANP  120
INSVPIPLPP SRNARPSSMQ SKRSSSAHHD DPSSSLLKRR RSSLGPDNPS TSADRTTELD  180
NEDDDVAELE AAAAAASSGG AAAGDTESAG LRLLGLLLQC AECVAMDRLN DASNLLPEIA  240
ELSSPFGSSA ERVAAYFADA LSARIVSSYL GTYAPLTIKS LTKSHNQKLF NALQTYNSIS  300
PLVKFSHFTA NQAIFQALHG EDHVHVIDLD IMQGLQWPGL FHILASRPRK IKSLKITGLG  360
SSMELLESTG RRLSEFASSL GLPFEFNPVE GKIGNVKDLG QLGVMAGETI VIHWMHHCLY  420
DVTGSDFGTL RLLTLLRPKL ITIVEQDLSH GGSFLGRFVE ALHYYSALFD ALGDGLGTDS  480
VERHTVEQQL LGCEIRNIVA VGGPKRTGEV KVERWGEELR RIGFRPVSLA GNPAAQASLL  540
LGMFPWKGYT LVEENGCLKL GWKDLSLLTA SAWQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-16421957525380Protein SCARECROW
5b3h_A1e-16421957524379Protein SCARECROW
5b3h_D1e-16421957524379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172695.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A068V5H20.0A0A068V5H2_COFCA; Uncharacterized protein
STRINGXP_006481359.10.0(Citrus sinensis)
STRINGXP_006429765.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-177GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]