PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc05_g00010

Common Name

GSCOC_T00017008001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 540aa MW: 58442.5 Da PI: 6.1632

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g00010	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	413.2	2.3e-126	182	537	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAeav++++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ + s ++ ++a+++f+ +sP++kfsh+taN Cc05_g00010 182 LTLLLQCAEAVAADNLEEANNMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPAVPHS----QKMVSAFQVFNGISPFIKFSHFTAN 275 579***********************************************************99996....89999**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e+le+tg+rL++fAe+lg+pfefn+ va+++ +l++ +L+v+ Cc05_g00010 276 QAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRMTGLGT----SMEALEATGKRLSDFAEKLGLPFEFNA-VADKVGNLDPGRLKVS 368 **********************************************....***********************.8*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++Ea+aV++ h l+d s+s +s +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll+rei+ Cc05_g00010 369 KREAVAVHWLQ--HCLYDVSGSDTS----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSREIR 459 ******9..889988888888....******************.899*************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+a g +r + + +++Wr++l ++GFk ++l+ +aa+qa lll +++sdgy++ e++g+l lgW+d L+++SaWr Cc05_g00010 460 NVLAVGGPSRSSDVK-FNNWRQKLLQSGFKGISLGGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWRDLCLLTASAWR 537 *****888776.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.465	155	517	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-124	182	537	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MGSLSPAPLP HNLIHHRQRP QTQTQTQTHT PSICGFSGLP LFPPDRNKYA AAGGAEQLLP 60 SSTSTSSNTA AGIDGNSQQQ QPMRNNDPAA AAATGVSYVS SATVPNLTNQ VHHRSQQQQQ 120 SSEPEETQTP QPSEQQHRDS PPPPDADADA AAAVTAASSA SRSLRNEEIR QQKRDEQGLH 180 LLTLLLQCAE AVAADNLEEA NNMLLEISEL STPFGTSAQR VAAYFSEAMS ARLVSSCLGI 240 YASLPAVPHS QKMVSAFQVF NGISPFIKFS HFTANQAIQE AFDREERVHI IDLDIMQGLQ 300 WPGLFHILAS RPGGPPFVRM TGLGTSMEAL EATGKRLSDF AEKLGLPFEF NAVADKVGNL 360 DPGRLKVSKR EAVAVHWLQH CLYDVSGSDT STLWLLQRLA PKVVTVVEQD LSHAGSFLGR 420 FVEAIHYYSA LFDSLGACYG EESEERHVVE QQLLSREIRN VLAVGGPSRS SDVKFNNWRQ 480 KLLQSGFKGI SLGGNAAAQA TLLLGMFPSD GYTLVEDNGT LKLGWRDLCL LTASAWRPS*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MGSLSPAPLP HNLIHHRQRP QTQTQTQTHT PSICGFSGLP LFPPDRNKYA AAGGAEQLLP  60
SSTSTSSNTA AGIDGNSQQQ QPMRNNDPAA AAATGVSYVS SATVPNLTNQ VHHRSQQQQQ  120
SSEPEETQTP QPSEQQHRDS PPPPDADADA AAAVTAASSA SRSLRNEEIR QQKRDEQGLH  180
LLTLLLQCAE AVAADNLEEA NNMLLEISEL STPFGTSAQR VAAYFSEAMS ARLVSSCLGI  240
YASLPAVPHS QKMVSAFQVF NGISPFIKFS HFTANQAIQE AFDREERVHI IDLDIMQGLQ  300
WPGLFHILAS RPGGPPFVRM TGLGTSMEAL EATGKRLSDF AEKLGLPFEF NAVADKVGNL  360
DPGRLKVSKR EAVAVHWLQH CLYDVSGSDT STLWLLQRLA PKVVTVVEQD LSHAGSFLGR  420
FVEAIHYYSA LFDSLGACYG EESEERHVVE QQLLSREIRN VLAVGGPSRS SDVKFNNWRQ  480
KLLQSGFKGI SLGGNAAAQA TLLLGMFPSD GYTLVEDNGT LKLGWRDLCL LTASAWRPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	165	538	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027089628.1	0.0	protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A068V5G6	0.0	A0A068V5G6_COFCA; Uncharacterized protein
STRING	VIT_08s0056g00050.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8258	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein