PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g16510

Common Name

GSCOC_T00035756001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 502aa MW: 54120.4 Da PI: 6.9006

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g16510	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	147	207	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Cc04_g16510 147 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 207 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	132	204	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	149	205	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	151	205	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	153	189	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MKEIMEMKDP EIKLFGKKIA LLENGKRILV VVPAAGEDSS SVSGGENSVG SDSDLSMDSR 60 KAEDEKDQEK RETASDKDCP SGKLCSSEPR VKDPIAEELP ILKSSSDSDG NSNNYSTDED 120 SPVKQPPKAE NDQSDATDSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN INQPRHFCKS 180 CQRYWTAGGT MRNVPVGAGR RKNKNSASHC RHITISEALQ AARIDTPNGF HHLNFKPNGT 240 VLSFGSDSPL CDSMASVLNL AEKKSPNGSQ NGFYKLDHGI SVSLKGTENG DDCSSGSSVT 300 TSNSTVDGAK NGLQEPVMQQ INGFPSPVSC LPGVPWAFPW SSTVPLPAIC PPGFPMPFYP 360 TPFWNCGVPG AWSIPWLPPV FPTGNQKNSG SGPNSPTLGK HSRNGELIKQ NNPEGKDSQE 420 QRASEGSILI PKTLRIDDPD EAAKSSIWTT LGINYDSISR GGLFKALQPK GDEKKHLTTA 480 SPVLQANPAA LSRSVTFQES A*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MKEIMEMKDP EIKLFGKKIA LLENGKRILV VVPAAGEDSS SVSGGENSVG SDSDLSMDSR  60
KAEDEKDQEK RETASDKDCP SGKLCSSEPR VKDPIAEELP ILKSSSDSDG NSNNYSTDED  120
SPVKQPPKAE NDQSDATDSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN INQPRHFCKS  180
CQRYWTAGGT MRNVPVGAGR RKNKNSASHC RHITISEALQ AARIDTPNGF HHLNFKPNGT  240
VLSFGSDSPL CDSMASVLNL AEKKSPNGSQ NGFYKLDHGI SVSLKGTENG DDCSSGSSVT  300
TSNSTVDGAK NGLQEPVMQQ INGFPSPVSC LPGVPWAFPW SSTVPLPAIC PPGFPMPFYP  360
TPFWNCGVPG AWSIPWLPPV FPTGNQKNSG SGPNSPTLGK HSRNGELIKQ NNPEGKDSQE  420
QRASEGSILI PKTLRIDDPD EAAKSSIWTT LGINYDSISR GGLFKALQPK GDEKKHLTTA  480
SPVLQANPAA LSRSVTFQES A*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027123677.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A068UVL6	0.0	A0A068UVL6_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-90	cycling DOF factor 3