PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g16110

Common Name

GSCOC_T00042402001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 336aa MW: 35483.5 Da PI: 8.9902

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g16110	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.3e-14	124	168	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Cc04_g16110 124 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 168 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.186	117	173	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-16	119	174	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-16	120	172	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-10	121	171	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-11	123	167	IPR009057	Homeodomain-like
CDD	cd00167	2.65E-9	124	168	No hit	No description
Pfam	PF00249	2.6E-11	124	168	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSRCCSQCGS NGHNSHTCGG GSSSASAADG GGGSDSGSGS ISEFMLFGVR VKVDPMRKSV 60 SMNNLSDYEH HPSNASTVQK NSVHLDASAP KAADDVAAGY ASADDALPTH HSSAAARERK 120 RGVPWTEEEH KLFLLGLQKV GKGDWRGISR NFVKTRTPTQ VASHAQKYYL RKSNLNRRRR 180 RSSLFDLTPD SVTGVPMEEG DGHLDETANP ALPATSMPPN ESSSVNGFAG APFPVTVGPI 240 LVPVQVQNPL SSMTACQADA FSNGSALVPV PVPVIPVPNY ATSAVFNLNQ RVAAESVSLR 300 LSLSSSDHQR QSSTRHRAFQ RMPSFKNGDG IITVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027125810.1	0.0	transcription factor MYB1R1
Refseq	XP_027125812.1	0.0	transcription factor MYB1R1
Refseq	XP_027169777.1	0.0	transcription factor MYB1R1-like
Swissprot	Q2V9B0	3e-76	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A068V327	0.0	A0A068V327_COFCA; Uncharacterized protein
STRING	XP_009760664.1	1e-92	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	2e-48	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]