PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g14490
Common NameGSCOC_T00004361001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 301aa    MW: 33887.6 Da    PI: 10.0267
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g14490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.22.1e-09221242122
      G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                  k+r+ WtpeLH++Fv av++LG
  Cc04_g14490 221 KARVTWTPELHAKFVAAVQKLG 242
                  68*******************6 PP
2G2-like27.95.1e-092642912451
      G2-like  24 sekAtPktilelmkvkgLtlehvkSHLQ 51 
                  + +++Pk++lelm+ + Lt+ +v+SHLQ
  Cc04_g14490 264 IRQTVPKKVLELMNEPHLTRGNVASHLQ 291
                  5789************************ PP
3Response_reg65.62.3e-22291361108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl +dD+ + +++l+  l+k gy +v++++++ ea+e+l++++  +D++++D++ ++md ++ll+ i  e  ++p+i+ +a+++ e +++ +  Ga+
   Cc04_g14490  29 VLAIDDNVVCLKVLAFELQKCGY-QVTATTKAAEAIEMLRKNKdsYDIVITDVMRSDMDVFKLLEIIGLEM-DIPVIMTSANNDLEVIEKGVMHGAR 123
                   7899*******************.9**************888889********************996644.8************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+l+Kp+  e l 
   Cc04_g14490 124 DYLVKPVGLEILK 136
                   ******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.6E-3525166No hitNo description
SuperFamilySSF521721.57E-3125177IPR011006CheY-like superfamily
SMARTSM004484.8E-2327139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.4628143IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-1729137IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.47E-2230143No hitNo description
SuperFamilySSF466891.97E-9219292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-18219291IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-8265292IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSGKMFNAHL ASQPSFQQRD NHFSQGLRVL AIDDNVVCLK VLAFELQKCG YQVTATTKAA  60
EAIEMLRKNK DSYDIVITDV MRSDMDVFKL LEIIGLEMDI PVIMTSANND LEVIEKGVMH  120
GARDYLVKPV GLEILKNIWQ HVIRKTTYNP LPAQRIEANR AIRIPAQQIE ANMASRVPAQ  180
KMEADRAIRR SARVLHRKNH TVEDGQAVQS HDAPPLLEHK KARVTWTPEL HAKFVAAVQK  240
LGQEGVIYSI RFRSLVQIIL LMSIRQTVPK KVLELMNEPH LTRGNVASHL QVSLAFVLIP  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122286.10.0two-component response regulator ARR10-like
TrEMBLA0A068VCQ20.0A0A068VCQ2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1548956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-60response regulator 12