PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g14230
Common NameGSCOC_T00035956001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 392aa    MW: 45169.6 Da    PI: 7.1719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g14230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-16151197148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd llv++v+++G + W+ Ia+ +  gR +kqc++rw+++l
      Cc04_g14230 151 KGQWTIEEDRLLVHLVEKFGVRKWSHIAQVLK-GRIGKQCRERWHNHL 197
                      799****************************9.*************97 PP
2Myb_DNA-binding57.23.8e-18205245345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+
      Cc04_g14230 205 IWTEEEDRILIEAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 245
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.109146201IPR017930Myb domain
SMARTSM007176.2E-15150199IPR001005SANT/Myb domain
PfamPF002492.1E-15151197IPR001005SANT/Myb domain
SuperFamilySSF466897.91E-32151244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-26152203IPR009057Homeodomain-like
CDDcd001677.64E-14154197No hitNo description
SMARTSM007173.1E-17202250IPR001005SANT/Myb domain
PROSITE profilePS5129421.401202252IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-22204251IPR009057Homeodomain-like
CDDcd001671.34E-13206248No hitNo description
PfamPF002491.7E-16206245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEFNTKCSNK PGHQQFSMPA NFLKPDIDQD FCMDNCQSKG FLQDFQHLDH FSFTGSSFNP  60
DLGIHTTGFD PFDPFFNGSS MIDFDYLEFK PFEENDNNNG KLVTQNFEGG GGFVYYKESG  120
TKRNNNRFSN IALSSSTKKQ GRGRKKSKSA KGQWTIEEDR LLVHLVEKFG VRKWSHIAQV  180
LKGRIGKQCR ERWHNHLRPD IKKDIWTEEE DRILIEAHAE IGNKWAEIAK KLPGRTENSI  240
KNHWNATKRR QFSRRKCRTK WPKPSSLLQN YIKSLNFEKS SSGRKNASTS DTPTIVDHKQ  300
NSTPNEEAME LNSDPLVPDY DFSEVPEFTL DDKLFERTSI NNLNAEIHSA SPILDDNGFC  360
MEIPYDVPPP IMQFEVKKEL DLMEMISHVN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-451512514104C-Myb DNA-Binding Domain
1msf_C4e-451512514104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027169364.10.0transcription factor MYB98-like
SwissprotQ9S7L29e-74MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A068UV500.0A0A068UV50_COFCA; Uncharacterized protein
STRINGXP_009603629.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-72myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]