PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g13920 | ||||||||
Common Name | GSCOC_T00035909001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 213aa MW: 24468.7 Da PI: 10.2056 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.3 | 3.8e-21 | 44 | 128 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ k ++++r r gC+a++ +k+ek g+w+v k++ +HnH+l+ Cc04_g13920 44 YYDEYALRTGFVTRVLSSRKSERDGSIISRGLGCRGIYSHNSAK----VSSQKRDRRRGGCTAMMLIKREKPGRWVVRKFVRDHNHPLV 128 8*********************************7554444444....458899999******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-19 | 44 | 128 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MLVDDGTRRL QTSGCGETSL CEVEQGQEPY EDMVFESEGA ARAYYDEYAL RTGFVTRVLS 60 SRKSERDGSI ISRGLGCRGI YSHNSAKVSS QKRDRRRGGC TAMMLIKREK PGRWVVRKFV 120 RDHNHPLVDS LPRRRPTFDE KDKRIQELTA ELRVKKRLSA AYKEQLLSLM KDVENHNEHL 180 STKVQVVRNN LKELEARRQE LVNHNSRTYG KG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027126069.1 | 1e-154 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_027168592.1 | 1e-154 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A068UVU4 | 1e-155 | A0A068UVU4_COFCA; Uncharacterized protein | ||||
STRING | XP_009764129.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-55 | FAR1 family protein |