PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g12230
Common NameGSCOC_T00005272001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 330aa    MW: 36737.8 Da    PI: 4.4737
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g12230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-092703032255
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yp+++++  LA+++gL+++q+ +WF N+R ++
  Cc04_g12230 270 WPYPTEADKIALASSTGLDQKQINNWFINQRKRH 303
                  58*****************************885 PP
2ELK30.11.1e-10223244122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  E+K+ Ll KYsgy++sL++EF+
  Cc04_g12230 223 EIKEKLLVKYSGYISSLRHEFC 244
                  89*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-2083127IPR005540KNOX1
PfamPF037903.1E-2184126IPR005540KNOX1
SMARTSM012569.7E-21133184IPR005541KNOX2
PfamPF037915.2E-22137183IPR005541KNOX2
PfamPF037893.4E-9223244IPR005539ELK domain
PROSITE profilePS512139.935223243IPR005539ELK domain
SMARTSM011883.9E-6223244IPR005539ELK domain
PROSITE profilePS5007112.276243306IPR001356Homeobox domain
SMARTSM003897.9E-13245310IPR001356Homeobox domain
SuperFamilySSF466891.33E-18245314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27248306IPR009057Homeodomain-like
CDDcd000862.27E-13255306No hitNo description
PfamPF059201.3E-17263302IPR008422Homeobox KN domain
PROSITE patternPS000270281304IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDMYGLPSS NTTSTEGNPS TCQPPIAASL KEDDFEAFGA SWSSALFDSS ASPDAAGAIT  60
CNSIKRSSTT GTGSSSSEEE SFSAMKASIS SHPLYTKLLE AYIDCQKVGA PPEIAMFLDE  120
ILQENQLSIN NTGTYCVNDD PELDEFMETY CDVLSKYKLD LEKPYDEASK FLTNMESQLS  180
NLCSNTPRML DEAARSSNED GSSGEVEVLQ EKSSNGPAEV NNEIKEKLLV KYSGYISSLR  240
HEFCRKKKKG KLPKEARQIL LNWWKVHCDW PYPTEADKIA LASSTGLDQK QINNWFINQR  300
KRHWKPPENL QYPSLINNNE YGSFFLNVD*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122057.10.0homeobox protein knotted-1-like 1
SwissprotQ84JS69e-84KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A068V8060.0A0A068V806_COFCA; Uncharacterized protein
STRINGVIT_17s0000g08710.t016e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.14e-85KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]