PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g10680 | ||||||||
Common Name | GSCOC_T00042636001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WOX | ||||||||
Protein Properties | Length: 247aa MW: 28256.9 Da PI: 5.3864 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70.1 | 2.7e-22 | 81 | 142 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 rr+R+++t++ql++Le++F + n +ps+e+ ++++++l +++e++V++WFqNrRa++kk Cc04_g10680 81 RRQRWNPTAQQLQILERVFDQgNETPSKEKVKDITAELakhgQISESNVYNWFQNRRARMKK 142 89******************99***************************************8 PP | |||||||
2 | Wus_type_Homeobox | 95.8 | 3.7e-31 | 81 | 144 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+Pt++Q++iLe+++++G tP+ke++++itaeL+++G+i++ NV++WFQNr+aR ++kq Cc04_g10680 81 RRQRWNPTAQQLQILERVFDQGNETPSKEKVKDITAELAKHGQISESNVYNWFQNRRARMKKKQ 144 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 75 | 144 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.84E-18 | 77 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.196 | 78 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-13 | 80 | 147 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-20 | 81 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.91E-14 | 81 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEGQNIHGGN LNNGDDMFVK VMTDEQMEIL GKQIAAYATI CEQLEDLHRA LISQNDPSHF 60 MLRNPYLTPL MTTSSLHRIP RRQRWNPTAQ QLQILERVFD QGNETPSKEK VKDITAELAK 120 HGQISESNVY NWFQNRRARM KKKQVVVENK KTEPETQMVT ESSLEEGEKL KPSEPMIEGQ 180 NYCVQKVSAG NSIFSFDEQG MEMQQPLFAI EGFHRGMSPD KAKIHYLLED MDVNPPGCYD 240 PYIHAE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRARMKKKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121485.1 | 0.0 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 4e-54 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A068V2Q1 | 0.0 | A0A068V2Q1_COFCA; Uncharacterized protein | ||||
STRING | XP_009777417.1 | 1e-59 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA22020 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-50 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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