PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g10490
Common NameGSCOC_T00042601001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 837aa    MW: 92416.9 Da    PI: 4.4639
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g10490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18321231100
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkvl+  d ++ + l lp+kfa++ ++  ++  + +led++g +W+v+l+  k+  +  +t+GW+eF  +++L++gDf++F +++ + f  vv +f+
  Cc04_g10490  32 FFKVLVG-DDFS-QFLLLPRKFADTVMYLVNQ--ETKLEDSNGVQWTVTLSLAKN--SLAFTRGWQEFSLDHNLQAGDFLLFNYIKGTHF--VVYIFD 121
                  7777733.4444.459*******999665434..79**************55555..588************************987777..*****9 PP

                  SS CS
           B3  99 ks 100
                  ks
  Cc04_g10490 122 KS 123
                  85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-2626125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2426125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.19830123IPR003340B3 DNA binding domain
CDDcd100178.41E-2231121No hitNo description
PfamPF023625.2E-1632122IPR003340B3 DNA binding domain
SMARTSM010192.4E-1632123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-9715823IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.22740836IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-9771821IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MVVMAGACEE CIRNCQLTHR NKMDLSPSVT RFFKVLVGDD FSQFLLLPRK FADTVMYLVN  60
QETKLEDSNG VQWTVTLSLA KNSLAFTRGW QEFSLDHNLQ AGDFLLFNYI KGTHFVVYIF  120
DKSCCESASD KIGLPRKRAR TRGSISSGGK PCEKIDTNPI NRQNSSTSGV SGSNSKNSHI  180
LPTTTNSTLN AEGGNGNWSF LDSSFDMMID WDAGPGLAAR RMCLYDLSEF ELQGDKEVAD  240
TDKGIDAVQS TSSHTQTSMR SQDEADKDPT GTKVGTKDLK IATFTEETDM GMMVNEKDLE  300
AKDDMLLERD TDKGIDAVQG TSDHTQTSLR CQNGPDKDPT GPEDLKLATF TEENDIGVMV  360
NDDDLKPEDG MLLKCDTDKG IDAVQGSSGH SQTSLRCQDG ADKDPTGAED LKIATITEKT  420
DIGMMVNVNN LEAEDDMLSE RDSDRGINAV QGTSDHGIGM MVNYDELKPE DGMLLKCDTD  480
KGIDAVQGSS DHSQTSLRCQ DGTDKDPPGT EDLKIATFTE ETDIGMMVND NNLEAKDDML  540
SEHDSDRGIN AVQGTSDHRE VSLRCQDGAD KDPTRTKDLE TATFTEETDI GMLVNDYNLG  600
GKDDILLECE KVPLADRSNS LPTVLCPELG EKGGNMSNVY IQLQNAERSN KKYDVDWSSP  660
YADEGACFRD SQEEFAGETK KMVRKEHPDT REEGDSSAKR LRGLKPLSVK DIGSSSQGPC  720
VCKPVKLEPV DLLDIPSSVA ESLTCLAMMD GQPYLELPAK LPGITYRKGM DRKSVLLQDQ  780
GKRFWPALYY YRSGFHVLRG CWDKFNKEHR IQAGDHYIFQ AENVYRGIYK VSVLHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140PRKRART
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167254.10.0uncharacterized protein LOC113767383 isoform X2
TrEMBLA0A068V3240.0A0A068V324_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-11B3 family protein