PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g09080 | ||||||||
Common Name | GSCOC_T00022785001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 31978.7 Da PI: 7.3577 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3e-18 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ Cc04_g09080 4 RGHWRPAEDEKLRELVEKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.5e-17 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+ell+ ++ +G++ W+ Iar ++ gRt++ +k++w+ Cc04_g09080 56 RSPFTEEEEELLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.727 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-16 | 3 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-18 | 4 | 49 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.51E-30 | 4 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-28 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.35E-14 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 21.117 | 55 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-14 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 58 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MCSRGHWRPA EDEKLRELVE KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT 60 EEEEELLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSK MYAKRAAQAS 120 RTDQQKPESP KQDMQASSNQ IKCSFSPILF ENNYSQRLHQ YPLTFSTCSP YLKELLSQKH 180 IHDMNMSRDK DKNEPVEFYD FLQVNADSNR SEVIDNVARK EDEEVEQESI MEHDHQAKTG 240 VPLIDFFSAG GDQYSEIRSE GCNYNHSEKV YY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-34 | 4 | 105 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121706.1 | 0.0 | transcription factor MYB54-like | ||||
Swissprot | Q6R0C4 | 1e-84 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A068TRJ2 | 0.0 | A0A068TRJ2_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0015s05130.1 | 1e-112 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 5e-87 | myb domain protein 52 |
Publications ? help Back to Top | |||
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