PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g08250

Common Name

GSCOC_T00022680001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 353aa MW: 37015.6 Da PI: 7.2957

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g08250	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	40	99	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s Cc04_g08250 40 HHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 99 57899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	33	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MQDIHAISGG GGVAGGGNRL FAGGSGGGDR RLRPHHNQNH HQALKCPRCD SLNTKFCYYN 60 NYNLSQPRHF CKSCRRYWTK GGVLRNVPVG GGCRKTKRSK PKQAASADVA VAGAPAPGER 120 KSNSHSSSES SSLTATTTAA KKTPGAGTTG EVASATVNSS SSGASNLMNF TDSRFFLAQM 180 NPSTSFEHPQ PLLNPAVTSE GQIFTDMGSF TSLMTSSNDP AMLGFANVTA TDISGYRLQQ 240 SHQGAVLDDQ SSNQMAGTAG GGGSDHELKM DQINCGFLDQ TAQIGFPGLQ QNRISNGGLQ 300 CLDWHINGGG GEGDDGGGEQ GLFDFSGTVD QAYWGQNQWA DNDQSLNFPP LV*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MQDIHAISGG GGVAGGGNRL FAGGSGGGDR RLRPHHNQNH HQALKCPRCD SLNTKFCYYN  60
NYNLSQPRHF CKSCRRYWTK GGVLRNVPVG GGCRKTKRSK PKQAASADVA VAGAPAPGER  120
KSNSHSSSES SSLTATTTAA KKTPGAGTTG EVASATVNSS SSGASNLMNF TDSRFFLAQM  180
NPSTSFEHPQ PLLNPAVTSE GQIFTDMGSF TSLMTSSNDP AMLGFANVTA TDISGYRLQQ  240
SHQGAVLDDQ SSNQMAGTAG GGGSDHELKM DQINCGFLDQ TAQIGFPGLQ QNRISNGGLQ  300
CLDWHINGGG GEGDDGGGEQ GLFDFSGTVD QAYWGQNQWA DNDQSLNFPP LV*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126696.1	0.0	dof zinc finger protein DOF5.4-like
Refseq	XP_027167428.1	0.0	dof zinc finger protein DOF5.4-like
Refseq	XP_027167429.1	0.0	dof zinc finger protein DOF5.4-like
TrEMBL	A0A068TRH1	0.0	A0A068TRH1_COFCA; Uncharacterized protein
STRING	VIT_17s0000g04850.t01	2e-83	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-43	OBF binding protein 4