PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g08190
Common NameGSCOC_T00022672001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 564aa    MW: 61524.3 Da    PI: 7.1908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g08190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-15261312255
                  HHHHHHHHHHHHHHHHHH..HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsa..feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h++ E+rRR++iN++  f++Lre++P++    ++K +Ka+ L +++eYI+ Lq
  Cc04_g08190 261 RSKHSATEQRRRSKINDRhvFQKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 312
                  889**************9779*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.0E-21256330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15257328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.592259311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12261312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-14261316No hitNo description
SMARTSM003531.6E-9265317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MELRQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGFLK TQDFLQPLEQ GCKNVAKEED  60
KVEINDLEKP PPAAPPSNIE HLLPGGIGTY SITYFNQRFL KPEGNVYMMA QASSTNINDE  120
NSNCSSYAGG GFTLWDESAV KKGKTGKENN AGDRAVLKEA EANVGAGQWR ASAERPSQSS  180
SNHKLNAATF SSLSTSKPSL AQRNQSFVNM ITSAKSFQEE DDDDDDEEEF VIKKEPSSHP  240
KGNLSVKVDG KSTDQKPSTP RSKHSATEQR RRSKINDRHV FQKLREIIPH SDQKRDKASF  300
LLEVIEYIQF LQDKVQKYEG PYPGWNQELS KPMPSRNLRG PEDFINSTQV TNIGSNPLIH  360
AAKLNESKVT SSSALAINGQ HLESDVSSAA AFGEKDHQPD ITDKAASVPM ALRHGIFPFG  420
GTSTASVPLS SMPASDIDKT TSHPQHQFWP RGSCTADSNI TDKLKDQLTI ESGTISISSI  480
YSQGLLSTLT QALQSSGIDL SQANISVQID LGKRANGRVN SSASVIKDVD VPSCNQAMPR  540
SIVTRAGEDS PGQALKRLKT SRS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123148.10.0transcription factor BIM1-like isoform X1
RefseqXP_027123149.10.0transcription factor BIM1-like isoform X1
TrEMBLA0A068TT570.0A0A068TT57_COFCA; Uncharacterized protein
STRINGSolyc03g114720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-85bHLH family protein