PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g07770 | ||||||||
Common Name | GSCOC_T00022613001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25975.3 Da PI: 10.5246 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 60 | 108 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +grWvAeI+d s ++ r +lg+f+taeeAa a+++a++ l+g Cc04_g07770 60 FLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDTAEEAALAYDNAARLLRG 108 67******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.981 | 59 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-28 | 59 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.87E-30 | 59 | 115 | No hit | No description |
SMART | SM00380 | 5.5E-34 | 59 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-8 | 60 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 60 | 117 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-11 | 62 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-8 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDGSMDAQSS KVQSQSQDPF RSLPLLPMMA TATPPESIEV QVDMESPRRE NITIHGRRRF 60 LGVRQRPSGR WVAEIKDSSQ KLRLWLGTFD TAEEAALAYD NAARLLRGRN AKTNFTYNGT 120 MDTREENLSL LGKNPRLYQL LKHAIMKNLA KSSALDSSKS TRNFTDQSSQ EKRELRRISL 180 GSSKVYSSVI VAPSFSASLS QGREEPENNS RGALFNSLFY QTNVMSHNKL V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 55 | 123 | 12 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121343.1 | 1e-154 | ethylene-responsive transcription factor ERN3-like | ||||
TrEMBL | A0A068TQF5 | 1e-169 | A0A068TQF5_COFCA; Uncharacterized protein | ||||
STRING | XP_009617997.1 | 5e-62 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-16 | related to AP2 11 |