PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g07490
Common NameGSCOC_T00022569001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 300aa    MW: 32306 Da    PI: 8.8061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g07490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.3e-10956347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                      W+ eEd  +  a++++ +g    +W++Ia++++ +++  ++k ++ ++
      Cc04_g07490  9 VWSREEDIAFESAIAMHWTGdskeQWDKIASMVP-NKSIDELKQHYKTL 56
                     6*********************************.***********986 PP
2Myb_DNA-binding38.92e-12134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      Cc04_g07490 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 178
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.848561IPR017884SANT domain
SMARTSM007171.6E-7659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-5857IPR009057Homeodomain-like
PfamPF002491.3E-8956IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-9961IPR009057Homeodomain-like
CDDcd001672.61E-61357No hitNo description
PROSITE profilePS5129416.873127183IPR017930Myb domain
SuperFamilySSF466897.18E-17129184IPR009057Homeodomain-like
SMARTSM007172.3E-10131181IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.1E-17131181IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-11132177IPR009057Homeodomain-like
PfamPF002497.3E-11134178IPR001005SANT/Myb domain
CDDcd001671.00E-9134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSASSSSVVW SREEDIAFES AIAMHWTGDS KEQWDKIASM VPNKSIDELK QHYKTLVEDV  60
EAIEGGLVPL PNYSGEEASS STKDHQSFSA ITATDRRSNF GYRSAFPGLG HDSSGQGGGK  120
GGSRSEQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI  180
RLNSMNRDRR RSSIHDITSV NNGDVSSHQA PITGQQTNTT PSATAAAALG PAMKHRGQQT  240
MHGLGVYGAP VGHPVVAAAA APGHMASAVG TPVLLPHGHH PPYVVPVAYP MAPPQPMHQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126714.10.0transcription factor MYBS1-like
RefseqXP_027168112.10.0transcription factor MYBS1-like
SwissprotQ9FNN61e-85SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A068TSZ50.0A0A068TSZ5_COFCA; Uncharacterized protein
STRINGVIT_17s0000g04130.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-63MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]