PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g07160 | ||||||||
Common Name | GSCOC_T00022522001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | CO-like | ||||||||
Protein Properties | Length: 432aa MW: 48739.6 Da PI: 4.6222 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.8 | 1.3e-09 | 16 | 58 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r C+ + +k++++fC ++ +lC+ C ++ H+ H++ Cc04_g07160 16 ARACDSCLKKRARWFCAADDAFLCQACDTSVHSAnqlasrHER 58 578*****************************65777777776 PP | |||||||
2 | CCT | 68.8 | 1.5e-23 | 375 | 418 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Cc04_g07160 375 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 418 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.2E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.007 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.56E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.122 | 375 | 417 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.8E-18 | 375 | 417 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MITEGKTANV LGGKTARACD SCLKKRARWF CAADDAFLCQ ACDTSVHSAN QLASRHERIR 60 LATSSFMPIE TKGDENSLPT WHQGFTRKAR TPRNNKASLV HQPKDEEKMA KANPLPLVPE 120 ISGDETSPDE SEEQHLFCRV PVFDPFAAEL CSELSDEVQN IQADKGTHDE ILTSNELNVL 180 LNDDQDLDIP ELIASDAELA EFAADVESLL GTGLDEDSCH MEDPGMMVCK EEDDVVDVSF 240 EDKLVKVEDE DDQEVQAVIA CHLDPALDMA RESLNWDFDS SSPVIEEEEE LKVTKDMPDK 300 DIKSKEEERR MMHLKLNYEE VITAWASQGS PWADGTKPEF NLGDCWPDFM GMSLNELHHP 360 NGAGGGRVSS HDEEREARVT RYREKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRTSF 420 AGPSFPYLMK K* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 385 | 401 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027167869.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A068TQ36 | 0.0 | A0A068TQ36_COFCA; Uncharacterized protein | ||||
STRING | EOY21020 | 1e-156 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 5e-79 | B-box type zinc finger protein with CCT domain |