PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc04_g05860 | ||||||||
Common Name | GSCOC_T00022355001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26742.2 Da PI: 9.2096 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.9e-20 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Cc04_g05860 54 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 103 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-33 | 53 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-22 | 54 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.3E-14 | 54 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.55E-19 | 54 | 112 | No hit | No description |
SMART | SM00380 | 1.4E-37 | 54 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.908 | 54 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MTAMVSALSQ VIGSTDNNNS VAVVGNYPAL ADPQPAPAIE NRAQQEQGNQ RRRHYRGVRQ 60 RPWGKWAAEI RDPKKAARVW LGTFETAEAA ALAYDEAALR FKGNKAKLNF PERVQGKTEY 120 GYLTTRQDAR VVADQQVSHS HSNRSFPPPH EYPHILQYAE LLRSGDQNNL HDEAISSSAS 180 SFPGGPLASQ SSSGSSSNMS SQEQGQQQFL QFQSPYNVGR TSSSGNSEMW EEFHNNTYAR 240 R* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 53 | 114 | 4 | 66 | ATERF1 |
3gcc_A | 4e-27 | 53 | 114 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF278740 | 0.0 | KF278740.1 Coffea arabica ethylene response factor 15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121625.1 | 1e-179 | ethylene-responsive transcription factor ERF113-like | ||||
Swissprot | Q9FH54 | 8e-51 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A068TPR8 | 1e-178 | A0A068TPR8_COFCA; Uncharacterized protein | ||||
STRING | VIT_17s0000g00200.t01 | 7e-58 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-31 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|