PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g05820
Common NameGSCOC_T00022349001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LFY
Protein Properties Length: 393aa    MW: 43766.4 Da    PI: 7.2517
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g05820genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY641.99.3e-19613761386
      FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaav.seapleaaaaaaark..lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslse 95 
                  mdp+ fsaslfkwdpr+++  pp+r le  a+  ++p +++ ++  r+  l +leelf+ayG+ry+t+akiaelGft++tL++mkdeeldd+m+sls+
  Cc04_g05820   1 MDPDGFSASLFKWDPRSVMP-PPTRFLEGVAAaLPPPPQTMYSVRPRElgLGGLEELFQAYGIRYYTAAKIAELGFTMNTLLHMKDEELDDMMNSLSQ 97 
                  9***************9885.5555555544404444344444444443467********************************************** PP

      FLO_LFY  96 ifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeg.lseepvqeekeaagsggegl..geaelvaaeekkseeekkkask 190
                  ifr+dllvGeryGikaavraerrrleeee  ++rr+ll+ d++++ldalsqe+ lseepvq+ekea gsg +    +++e+v+++    + +      
  Cc04_g05820  98 IFRWDLLVGERYGIKAAVRAERRRLEEEE--SRRRHLLTGDTTNTLDALSQEAgLSEEPVQQEKEAGGSGSGAGggQTWETVGKK----QGR------ 183
                  ***************************87..99999****************55*********9988886665400344444333....111...... PP

      FLO_LFY 191 kkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfry 288
                   k+k + +k l+  + ede+e+e  +e+++g++g+erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfry
  Cc04_g05820 184 -KKKGRASKILT--SIEDEDESEGAEEDENGSGGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRY 278
                  .12222222222..33444556666777788889**************************************************************** PP

      FLO_LFY 289 akkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                  akkagasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvPtkLrqLCh+ers+a+
  Cc04_g05820 279 AKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERSNAA 376
                  ***********************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.3E-2021376IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDPDGFSASL FKWDPRSVMP PPTRFLEGVA AALPPPPQTM YSVRPRELGL GGLEELFQAY  60
GIRYYTAAKI AELGFTMNTL LHMKDEELDD MMNSLSQIFR WDLLVGERYG IKAAVRAERR  120
RLEEEESRRR HLLTGDTTNT LDALSQEAGL SEEPVQQEKE AGGSGSGAGG GQTWETVGKK  180
QGRKKKGRAS KILTSIEDED ESEGAEEDEN GSGGSERQRE HPFIVTEPGE VARGKKNGLD  240
YLFHLYEQCR EFLIQVQNIA KERGEKCPTK VTNQVFRYAK KAGASYINKP KMRHYVHCYA  300
LHCLDEDASN ALRRAFKERG ENVGAWRQAC YKPLVAIAAR QGWDIDAIFN AHPRLSIWYV  360
PTKLRQLCHA ERSNAAAASI SVTGGGAAQL PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1132143852173PROTEIN LEAFY
2vy2_A1e-1132143852173PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122824.10.0protein ALF-like
RefseqXP_027125953.10.0protein ALF-like
RefseqXP_027169744.10.0protein ALF
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A068TPZ00.0A0A068TPZ0_COFCA; Uncharacterized protein
STRINGMigut.I00669.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-152floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]